ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2ytzB1 - ECOD Domain | ECOD

ECOD/Domains/e2ytzB1

e2ytzB1

UID: 000099861

PDB

Range: B:3-376
PDB: 2YTZ chain B(all domains)
UniProt: O59493 (all domains)
Gene: trm1

Molecule: N(2),N(2)-dimethylguanosine tRNA methyltransferase

3D Structure

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Related Domains

Browse other domains in TRM →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyTRM(2003.1.5.19)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

N2,N2-dimethylguanosine tRNA methyltransferase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 2YTZ RCSB PDB: 2YTZ PDBe: 2YTZ UniProt: O59493

Downloads

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Drug annotations from DrugDomain.