ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2zxuB1 - ECOD Domain | ECOD

ECOD/Domains/e2zxuB1

e2zxuB1

UID: 000998796

PDB

Range: B:1-120,B:186-305
PDB: 2ZXU chain B(all domains)
UniProt: P16384 (all domains)
Gene: miaA

Molecule: tRNA delta(2)-isopentenylpyrophosphate transferase

3D Structure

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Related Domains

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Classification

AArchitecturealpha arrays(a.6)

XX-grouptRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain(3949)

HH-grouptRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain(3949.1)

TT-grouptRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain(3949.1.1)

FFamilyIPPT(3949.1.1.1)

Ligands

in contact, ≤ 4 Å

Dimethylallyl S-ThiolodiphosphateDST
drugDrugBank DB02270
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

IPP transferase

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 2ZXU RCSB PDB: 2ZXU PDBe: 2ZXU UniProt: P16384

Downloads

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