F-group (family)
1.1.5.11 UbiD
Ligands and drugs
401
Member domains
154
with ligand contacts (≤ 4 Å)
38.4% of members
126
with DrugDomain annotations
31.4% of members
37
with a DrugBank compound
9.2% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 1.1.5.11 belongs to X-group 1 cradle loop barrel, which binds 9.4 ligand superclasses per 20 proteins, broader than 87% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB03247 | FMN | Flavin mononucleotide | 15 |
| DB09157 | CO2 | Carbon dioxide | 1 |
| DB18313 | TCA | Cinnamic acid | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MNmetal | MANGANESE (II) ION | 102 |
| Kmetal | POTASSIUM ION | 99 |
| 4LU | 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-yl)-D-ribitol | 50 |
| BYN | hydroxylated prenyl-FMN | 37 |
| NAmetal | SODIUM ION | 29 |
| FEmetal | FE (III) ION | 18 |
| FMN | FLAVIN MONONUCLEOTIDE | 15 |
| CAmetal | CALCIUM ION | 12 |
| MGmetal | MAGNESIUM ION | 12 |
| FZZ | 1-deoxy-5-O-phosphono-1-[(10aR)-2,2,3,4-tetramethyl-8,10-dioxo-1,2,8,9,10,10a-hexahydro-6H-indeno[1,7-ef]pyrimido[4,5-b][1,4]diazepin-6-yl]-D-ribitol | 7 |
| BYC | benzoyl coenzyme A | 6 |
| CL | CHLORIDE ION | 6 |
| RBmetal | RUBIDIUM ION | 6 |
| SCN | THIOCYANATE ION | 6 |
| WC8 | 2-CN-benzoyl coenzyme A | 6 |
| 4VP | 4-ethenylphenol | 5 |
| 7D9 | (16~{R})-11,12,14,14-tetramethyl-3,5-bis(oxidanylidene)-8-[(2~{S},3~{S},4~{R})-2,3,4-tris(oxidanyl)-5-phosphonooxy-pentyl]-1,4,6,8-tetrazatetracyclo[7.7.1.0^{2,7}.0^{13,17}]heptadeca-2(7),9(17),10,12-tetraene-16-sulfonic acid | 3 |
| ICB | 1H-indole-2-carboxylic acid | 3 |
| JQ8 | phenylpropiolic acid | 3 |
| JQZ | prFMN cofactor and phenylpropiolic acid | 3 |