ECOD
H-group (homology)

10.2 Nucleoplasmin-like/VP (viral coat and capsid proteins)

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Ligands and drugs

16,690
Member domains
3,836
with ligand contacts (≤ 4 Å)
23.0% of members
3,514
with DrugDomain annotations
21.1% of members
1,382
with a DrugBank compound
8.3% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 10.2 belongs to X-group 10 jelly-roll, which binds 8.5 ligand superclasses per 20 proteins, broader than 66% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB03721SIAN-acetyl-alpha-neuraminic acid141
DB08231MYRMyristic acid80
DB03796PLMPalmitic Acid75
DB028312HPDihydrogenphosphate22
DB02123CHOGlycochenodeoxycholic Acid18
DB05105W11Pleconaril18
DB00141NAGN-Acetylglucosamine15
DB03283FULbeta-L-fucose12
DB08726W71Disoxaril11
DB00173ADEAdenine10
DB03017DAOLauric acid10
DB03193STEStearic acid10
DB02210HEZHexane-1,6-Diol9
DB00143GSHGlutathione8
DB02379BGCBeta-D-Glucose8
DB08720W355-(5-(4-(4,5-dihydro-2-oxazoly)phenoxy)pentyl)-3-methyl osoxazole8
DB00615RBTRifabutin6
DB01045RFPRifampin6
DB01201RPTRifapentine6
DB01220RXMRifaximin6

Most frequently bound compounds

PDB ligandNameDomains in contact
CAmetalCALCIUM ION946
D5M2'-DEOXYADENOSINE-5'-MONOPHOSPHATE582
CLCHLORIDE ION447
MGmetalMAGNESIUM ION291
GALbeta-D-galactopyranose180
SIAN-acetyl-alpha-neuraminic acid159
NAmetalSODIUM ION124
SPHSPHINGOSINE112
KmetalPOTASSIUM ION79
MYRMYRISTIC ACID79
CUmetalCOPPER (II) ION60
PLMPALMITIC ACID60
BRBROMIDE ION42
CDmetalCADMIUM ION41
2HPDIHYDROGENPHOSPHATE ION26
ZNmetalZINC ION22
NAG2-acetamido-2-deoxy-beta-D-glucopyranose19
CHOGLYCOCHENODEOXYCHOLIC ACID18
NImetalNICKEL (II) ION17
IODIODIDE ION14