T-group (topology)
10.4.1 Spermadhesin, CUB domain
Ligands and drugs
1,801
Member domains
158
with ligand contacts (≤ 4 Å)
8.8% of members
122
with DrugDomain annotations
6.8% of members
75
with a DrugBank compound
4.2% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 10.4.1 belongs to X-group 10 jelly-roll, which binds 8.5 ligand superclasses per 20 proteins, broader than 66% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00141 | NAG | N-Acetylglucosamine | 53 |
| DB01593 | — | — | 5 |
| DB01989 | — | Methyl N-{[(1R)-1-({1-[(benzyloxy)carbonyl]-L-prolyl-6-ammonio-L-norleucyl}amino)-2-phenylethyl](hydroxy)phosphoryl}-L-alanyl-L-prolinate | 5 |
| DB14487 | — | — | 5 |
| DB14533 | — | — | 5 |
| DB09130 | — | — | 3 |
| DB04527 | — | beta-Hydroxyasparagine | 2 |
| DB00123 | LYS | Lysine | 1 |
| DB00843 | — | — | 1 |
| DB00945 | — | Acetylsalicylic acid | 1 |
| DB01828 | NME | Methylamine | 1 |
| DB05465 | — | — | 1 |
| DB08818 | — | — | 1 |
| DB15636 | — | — | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| CAmetal | CALCIUM ION | 104 |
| NAG | 2-acetamido-2-deoxy-beta-D-glucopyranose | 74 |
| NAmetal | SODIUM ION | 22 |
| CL | CHLORIDE ION | 2 |
| MGmetal | MAGNESIUM ION | 2 |
| P6G | HEXAETHYLENE GLYCOL | 2 |
| COmetal | COBALT (II) ION | 1 |
| LYS | LYSINE | 1 |
| NEH | ETHANAMINE | 1 |
| NME | METHYLAMINE | 1 |
| PBM | TRIMETHYL LEAD ION | 1 |