ECOD
F-group (family)

109.2.1.27 Lyase_8_N

Open in classification tree →Pfam PF08124 →

Ligands and drugs

60
Member domains
25
with ligand contacts (≤ 4 Å)
41.7% of members
19
with DrugDomain annotations
31.7% of members
14
with a DrugBank compound
23.3% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 109.2.1.27 belongs to X-group 109 Repetitive alpha hairpins, which binds 9.1 ligand superclasses per 20 proteins, broader than 82% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB00126ASCAscorbic acid1
DB0459646D4-O-{4,6-O-[(1S)-1-Carboxyethylidene]-β-D-mannopyranosyl}-D-glucopyranuronic acid1
DB0459746M[4,6-O-(1-CARBOXYETHYLIDENE)-BETA-D-MANNOSE]1
DB08438PVC(2E,4R,5S)-2,3,4,5-TETRAHYDROXY-6-(PALMITOYLOXY)HEX-2-ENOIC ACID1

Most frequently bound compounds

PDB ligandNameDomains in contact
NAmetalSODIUM ION5
NAG2-acetamido-2-deoxy-beta-D-glucopyranose2
46D(4AR,6R,7S,8R,8AR)-8-((5R,6R)-3-CARBOXY-TETRAHYDRO-4,5,6-TRIHYDROXY-2H-PYRAN-2-YLOXY)-HEXAHYDRO-6,7-DIHYDROXY-2-METHYLPYRANO[3,2-D][1,3]DIOXINE-2-CARBOXYLIC ACID)1
46M(4AR,6R,7S,8R,8AS)-HEXAHYDRO-6,7,8-TRIHYDROXY-2-METHYLPYRANO[3,2-D][1,3]DIOXINE-2-CARBOXYLIC ACID1
ASCASCORBIC ACID1
CAmetalCALCIUM ION1
CEG4,6-O-[(1S)-1-carboxyethylidene]-beta-D-glucopyranose1
CLCHLORIDE ION1
HGmetalMERCURY (II) ION1
IODIODIDE ION1
MANalpha-D-mannopyranose1
MLAMALONIC ACID1
MRD(4R)-2-METHYLPENTANE-2,4-DIOL1
PVC(2E,4R,5S)-2,3,4,5-TETRAHYDROXY-6-(PALMITOYLOXY)HEX-2-ENOIC ACID1
SIESULFAMIC ACID 1-DECYL-2-(4-SULFAMOYLOXYPHENYL)-1H-INDOL-6-YL ESTER1
XLSD-xylose1