T-group (topology)
1128.1.1 LYR protein
Ligands and drugs
1,058
Member domains
540
with ligand contacts (≤ 4 Å)
51.0% of members
345
with DrugDomain annotations
32.6% of members
76
with a DrugBank compound
7.2% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 1128.1.1 belongs to X-group 1128 LYR protein, which binds 2.0 ligand superclasses per 20 proteins, narrower than 99% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB03429 | CDL | Tetrastearoyl cardiolipin | 53 |
| DB03912 | PNS | D-pantetheine 4'-phosphate | 14 |
| DB00974 | EDT | Edetic acid | 5 |
| DB02777 | PLC | Diundecyl Phosphatidyl Choline | 4 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| EHZ | ~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate | 191 |
| 8Q1 | S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate | 185 |
| ZMP | S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate | 142 |
| PLC | DIUNDECYL PHOSPHATIDYL CHOLINE | 20 |
| 3PE | 1,2-Distearoyl-sn-glycerophosphoethanolamine | 17 |
| PNS | 4'-PHOSPHOPANTETHEINE | 16 |
| CDL | CARDIOLIPIN | 7 |
| EDT | {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID | 6 |
| PM8 | S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE | 6 |
| PC7 | (7S)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE | 2 |