T-group (topology)
129.1.1 6-phosphogluconate dehydrogenase C-terminal domain-like
Ligands and drugs
5,342
Member domains
1,516
with ligand contacts (≤ 4 Å)
28.4% of members
1,189
with DrugDomain annotations
22.3% of members
975
with a DrugBank compound
18.3% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 129.1.1 belongs to X-group 129 6-phosphogluconate dehydrogenase C-terminal domain-like, which binds 8.5 ligand superclasses per 20 proteins, broader than 68% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB14128 | NAD | Nadide | 176 |
| DB03461 | NAP | Nicotinamide adenine dinucleotide phosphate | 169 |
| DB00157 | NAI | NADH | 141 |
| DB02338 | NDP | NADPH | 96 |
| DB01861 | UPG | Uridine diphosphate glucose | 63 |
| DB01713 | UDX | UDP-alpha-D-xylose | 37 |
| DB03434 | MPO | 3-(N-morpholino)propanesulfonic acid | 28 |
| DB03041 | UGA | UDP-alpha-D-glucuronic acid | 26 |
| DB03059 | CAA | Acetoacetyl-CoA | 25 |
| DB00172 | PRO | Proline | 22 |
| DB02076 | 6PG | 6-phospho-D-gluconic acid | 15 |
| DB18267 | HEM | Ferroheme | 15 |
| DB03345 | BME | Mercaptoethanol | 13 |
| DB03147 | FAD | Flavin adenine dinucleotide | 12 |
| DB03266 | PTD | Glutaral | 12 |
| DB04023 | GDX | GDP-alpha-D-mannuronic acid | 12 |
| DB00135 | TYR | Tyrosine | 11 |
| DB03051 | TFB | (S)-2-Tetrahydrofuroic acid | 10 |
| DB03387 | HIO | N-Hydroxy-N-Isopropyloxamic Acid | 10 |
| DB16833 | ADP | Adenosine disphosphate | 10 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MGmetal | MAGNESIUM ION | 332 |
| NAP | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | 185 |
| NAD | NICOTINAMIDE-ADENINE-DINUCLEOTIDE | 161 |
| NAI | 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE | 150 |
| NDP | NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | 117 |
| 9TY | cyclopropane-1,1-dicarboxylic acid | 100 |
| CL | CHLORIDE ION | 89 |
| UPG | URIDINE-5'-DIPHOSPHATE-GLUCOSE | 59 |
| UDX | URIDINE-5'-DIPHOSPHATE-XYLOPYRANOSE | 37 |
| MPO | 3[N-MORPHOLINO]PROPANE SULFONIC ACID | 28 |
| CAA | ACETOACETYL-COENZYME A | 27 |
| FAD | FLAVIN-ADENINE DINUCLEOTIDE | 26 |
| UGA | URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID | 26 |
| NAmetal | SODIUM ION | 22 |
| G8I | (2S)-2-hydroxy-3,3-dimethylbutanoic acid | 21 |
| HEM | PROTOPORPHYRIN IX CONTAINING FE | 20 |
| PRO | PROLINE | 20 |
| 6PG | 6-PHOSPHOGLUCONIC ACID | 19 |
| TFB | TETRAHYDROFURAN-2-CARBOXYLIC ACID | 15 |
| BME | BETA-MERCAPTOETHANOL | 13 |