ECOD
T-group (topology)

172.1.1 Citrate synthase

Open in classification tree →

Ligands and drugs

748
Member domains
352
with ligand contacts (≤ 4 Å)
47.1% of members
313
with DrugDomain annotations
41.8% of members
259
with a DrugBank compound
34.6% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 172.1.1 belongs to X-group 172 Citrate synthase-like, which binds 6.4 ligand superclasses per 20 proteins, narrower than 70% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB02637OAAOxaloacetate Ion74
DB01992COACoenzyme A73
DB00139SINSuccinic acid9
DB00119PYRPyruvic acid6
DB00157NAINADH4
DB02579AKRAcrylic Acid4
DB01969COFTrifluoroacetonyl coenzyme A3
DB03182FCXalpha-Fluoro-carboxymethyldethia coenzyme A complex2
DB04230NMXNitromethyldethia coenzyme A2
DB14128NADNadide2
DB14756SRTmeso-Tartaric acid2
DB00151CYSCysteine1
DB01846CAOOxidized coenzyme A1
DB03499—D-Malic acid1
DB04272—Citric acid1
DB11936——1

Most frequently bound compounds

PDB ligandNameDomains in contact
OAAOXALOACETATE ION95
COACOENZYME A84
ACOACETYL COENZYME *A47
Q5B(3S)-citryl-Coenzyme A24
CLCHLORIDE ION20
LMR(2S)-2-hydroxybutanedioic acid10
CMCCARBOXYMETHYL COENZYME *A9
SINSUCCINIC ACID9
UNLUnknown ligand9
9JTN-phenyl-2-selanylbenzamide8
MGmetalMAGNESIUM ION8
CMXCARBOXYMETHYLDETHIA COENZYME *A7
NAmetalSODIUM ION6
PYRPYRUVIC ACID6
AKRACRYLIC ACID4
COZCOENZYME A4
IODIODIDE ION4
SDXs-citryldethia Coenzyme A4
8JD[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (3R)-4-[(3-{[2-(ethylsulfanyl)ethyl]amino}-3-oxopropyl)amino]-3-hydroxy-2,2-dimethyl-4-oxobutyl dihydrogen diphosphate (non-preferred name)2
CAmetalCALCIUM ION2