177 Phospholipase C/P1 nuclease
Ligands and drugs
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
ClassyFire chemical superclasses of the ligands bound by this X-group's proteins, from DrugDomain annotations.
The raw number of superclasses rises with the number of proteins sampled; the per-20 value compares X-groups at equal depth.
| Superclass | Proteins | Expected | 0.25×observed / expected4× | Ratio | Significance |
|---|---|---|---|---|---|
| Homogeneous metal compounds | 10 | 4.8 | 2.07× | not tested | |
| Organic oxygen compounds | 3 | 2.0 | 1.53× | not tested | |
| Nucleosides, nucleotides, and analogues | 3 | 2.7 | 1.10× | not tested | |
| Lipids and lipid-like molecules | 1 | 1.1 | 0.91× | not tested | |
| Organoheterocyclic compounds | 1 | 1.5 | 0.66× | not tested | |
| Homogeneous non-metal compounds | 1 | 2.1 | 0.47× | not tested |
Unit: a protein (UniProt accession) with a ligand-binding domain in this X-group, counted once per superclass. Expected counts use each superclass's frequency across all ligand-binding X-groups; significance is Fisher's exact test with Benjamini–Hochberg correction. Buffers and crystallization additives are excluded. ECOD v295.2; the method follows the ECOD 2027 update, whose published figures used a slightly different artifact filter.
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00141 | NAG | N-Acetylglucosamine | 16 |
| DB02594 | DCZ | Doxecitine | 3 |
| DB00131 | AMP | Adenosine phosphate | 2 |
| DB02745 | URI | Uridine | 2 |
| DB03403 | C5P | Cytidine-5'-Monophosphate | 2 |
| DB00173 | ADE | Adenine | 1 |
| DB01643 | TMP | Thymidine monophosphate | 1 |
| DB02225 | PC5 | 1,2-Di-N-Pentanoyl-Sn-Glycero-3-Dithiophosphocholine | 1 |
| DB02980 | THS | Thymidine-5'-(dithio)phosphate | 1 |
| DB03798 | DCM | 2'-Deoxycytidine-5'-Monophosphate | 1 |
| DB03827 | 3PC | (3s)-3,4-Di-N-Hexanoyloxybutyl-1-Phosphocholine | 1 |
| DB04332 | ETE | 2-{2-[2-2-(Methoxy-Ethoxy)-Ethoxy]-Ethoxy}-Ethanol | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| ZNmetal | ZINC ION | 65 |
| NAG | 2-acetamido-2-deoxy-beta-D-glucopyranose | 15 |
| NAmetal | SODIUM ION | 9 |
| C5P | CYTIDINE-5'-MONOPHOSPHATE | 6 |
| CAmetal | CALCIUM ION | 6 |
| CDmetal | CADMIUM ION | 6 |
| CL | CHLORIDE ION | 4 |
| 5GP | GUANOSINE-5'-MONOPHOSPHATE | 3 |
| AMP | ADENOSINE MONOPHOSPHATE | 3 |
| DCZ | 2'-DEOXYCYTIDINE | 3 |
| FEmetal | FE (III) ION | 2 |
| U5P | URIDINE-5'-MONOPHOSPHATE | 2 |
| URI | URIDINE | 2 |
| 3PC | (3S)-3,4-DI-N-HEXANOYLOXYBUTYL-1-PHOSPHOCHOLINE | 1 |
| ADE | ADENINE | 1 |
| AS | 2-DEOXY-ADENOSINE -5'-THIO-MONOPHOSPHATE | 1 |
| D5M | 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE | 1 |
| DCM | 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE | 1 |
| ETE | 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL | 1 |
| GNG | 2'-DEOXY-GUANOSINE | 1 |