F-group (family)
2003.1.1.52 RmlD_sub_bind
Ligands and drugs
146
Member domains
42
with ligand contacts (≤ 4 Å)
28.8% of members
40
with DrugDomain annotations
27.4% of members
34
with a DrugBank compound
23.3% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2003.1.1.52 belongs to X-group 2003 Rossmann-like, which binds 8.9 ligand superclasses per 20 proteins, broader than 78% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB03461 | NAP | Nicotinamide adenine dinucleotide phosphate | 16 |
| DB02709 | STL | Resveratrol | 5 |
| DB00157 | NAI | NADH | 4 |
| DB02338 | NDP | NADPH | 4 |
| DB02561 | BDF | Beta-D-Fructopyranose | 3 |
| DB03723 | TRH | 2'-Deoxy-thymidine-beta-L-rhamnose | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| NAP | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | 16 |
| STL | RESVERATROL | 5 |
| CL | CHLORIDE ION | 4 |
| NDP | NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | 4 |
| BDF | beta-D-fructopyranose | 3 |
| NAI | 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE | 3 |
| AWU | [[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{R},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl] hydrogen phosphate | 2 |
| MGmetal | MAGNESIUM ION | 2 |
| NAmetal | SODIUM ION | 2 |
| ZNmetal | ZINC ION | 2 |
| A1IH7 | 2-[4-(hydroxymethyl)phenyl]ethanoic acid | 1 |
| CAmetal | CALCIUM ION | 1 |
| MRD | (4R)-2-METHYLPENTANE-2,4-DIOL | 1 |
| NAD | NICOTINAMIDE-ADENINE-DINUCLEOTIDE | 1 |
| TRH | 2'-DEOXY-THYMIDINE-BETA-L-RHAMNOSE | 1 |
| TXP | 1,4,5,6-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE | 1 |
| UNL | Unknown ligand | 1 |