T-group (topology)
2003.1.11 Formate/glycerate dehydrogenase catalytic domain-like
Ligands and drugs
2,297
Member domains
980
with ligand contacts (≤ 4 Å)
42.7% of members
779
with DrugDomain annotations
33.9% of members
742
with a DrugBank compound
32.3% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2003.1.11 belongs to X-group 2003 Rossmann-like, which binds 8.9 ligand superclasses per 20 proteins, broader than 78% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB14128 | NAD | Nadide | 497 |
| DB00640 | ADN | Adenosine | 134 |
| DB00157 | NAI | NADH | 72 |
| DB03461 | NAP | Nicotinamide adenine dinucleotide phosphate | 62 |
| DB02338 | NDP | NADPH | 35 |
| DB00173 | ADE | Adenine | 18 |
| DB03769 | DEA | D-Eritadenine | 13 |
| DB03940 | OXM | Oxamic Acid | 12 |
| DB04335 | NOS | Inosine | 10 |
| DB02238 | KMT | 4-methylthio-2-oxobutanoic acid | 9 |
| DB00119 | PYR | Pyruvic acid | 8 |
| DB01752 | SAH | S-adenosyl-L-homocysteine | 8 |
| DB02774 | PDO | 1,3-Propanediol | 8 |
| DB03273 | ADY | 3'-Oxo-Adenosine | 5 |
| DB08845 | AKG | Oxogluric acid | 5 |
| DB12156 | 3AD | Cordycepin | 5 |
| DB01902 | NEN | 1-Ethyl-Pyrrolidine-2,5-Dione | 4 |
| DB02175 | MLA | Malonic acid | 4 |
| DB02210 | HEZ | Hexane-1,6-Diol | 4 |
| DB03066 | LAC | D-Lactic acid | 4 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| NAD | NICOTINAMIDE-ADENINE-DINUCLEOTIDE | 691 |
| Kmetal | POTASSIUM ION | 183 |
| ADN | ADENOSINE | 143 |
| ADE | ADENINE | 139 |
| CL | CHLORIDE ION | 74 |
| NAP | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | 72 |
| NAI | 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE | 68 |
| NAmetal | SODIUM ION | 55 |
| AZI | AZIDE ION | 43 |
| NDP | NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | 34 |
| 7N5 | 2-Ketohexanoic acid | 16 |
| MGmetal | MAGNESIUM ION | 15 |
| NOS | INOSINE | 15 |
| ZNmetal | ZINC ION | 14 |
| DEA | D-ERITADENINE | 12 |
| P6G | HEXAETHYLENE GLYCOL | 12 |
| RBmetal | RUBIDIUM ION | 12 |
| OXM | OXAMIC ACID | 11 |
| KMT | 4-(METHYLSULFANYL)-2-OXOBUTANOIC ACID | 9 |
| PDO | 1,3-PROPANDIOL | 9 |