T-group (topology)
2003.1.3 Nucleotide-binding domain
Ligands and drugs
1,742
Member domains
371
with ligand contacts (≤ 4 Å)
21.3% of members
362
with DrugDomain annotations
20.8% of members
354
with a DrugBank compound
20.3% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2003.1.3 belongs to X-group 2003 Rossmann-like, which binds 8.9 ligand superclasses per 20 proteins, broader than 78% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB03147 | FAD | Flavin adenine dinucleotide | 313 |
| DB03461 | NAP | Nicotinamide adenine dinucleotide phosphate | 54 |
| DB03793 | BEZ | Benzoic acid | 21 |
| DB03247 | FMN | Flavin mononucleotide | 20 |
| DB00129 | ORN | Ornithine | 16 |
| DB02338 | NDP | NADPH | 16 |
| DB16833 | ADP | Adenosine disphosphate | 16 |
| DB02988 | ITR | Imino-Tryptophan | 9 |
| DB03531 | FAB | Flavin-adenine dinucleotide-N5-isobutyl ketone | 9 |
| DB04166 | BE2 | Anthranilic acid | 7 |
| DB07979 | IM3 | (2E)-3-(3,4-DIHYDROXYPHENYL)-2-IMINOPROPANOIC ACID | 4 |
| DB01753 | ODP | 4-oxo-nicotinamide-adenine dinucleotide phosphate | 3 |
| DB02838 | 2PC | 3,4-Dihydro-2h-Pyrrolium-5-Carboxylate | 3 |
| DB03225 | DTR | D-Tryptophan | 3 |
| DB00123 | LYS | Lysine | 2 |
| DB00125 | ARG | Arginine | 2 |
| DB00145 | — | Glycine | 1 |
| DB00171 | ATP | ATP | 1 |
| DB01786 | DAL | D-Alanine | 1 |
| DB02219 | CXS | 3-(cyclohexylamino)propanesulfonic acid | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| FAD | FLAVIN-ADENINE DINUCLEOTIDE | 323 |
| SF4 | IRON/SULFUR CLUSTER | 77 |
| NAP | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | 53 |
| FDA | DIHYDROFLAVINE-ADENINE DINUCLEOTIDE | 22 |
| BEZ | BENZOIC ACID | 21 |
| FMN | FLAVIN MONONUCLEOTIDE | 20 |
| ADP | ADENOSINE-5'-DIPHOSPHATE | 17 |
| NDP | NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | 16 |
| ORN | L-ornithine | 15 |
| CAmetal | CALCIUM ION | 10 |
| NAmetal | SODIUM ION | 9 |
| FAB | FLAVIN-ADENINE DINUCLEOTIDE-N5-ISOBUTYL KETONE | 8 |
| ITR | IMINO-TRYPTOPHAN | 8 |
| BE2 | 2-AMINOBENZOIC ACID | 7 |
| GRG | GERANYLGERANYL DIPHOSPHATE | 6 |
| 7V3 | (S)-(4-chlorophenyl)-phenyl-methanamine | 5 |
| CL | CHLORIDE ION | 5 |
| 2LD | 3-hydroxy-5-(2-phenylethyl)pyridin-2(1H)-one | 4 |
| 3LD | 3-hydroxy-6-(2-phenylethyl)pyridazin-4(1H)-one | 4 |
| 4P5 | 4H-furo[3,2-b]pyrrole-5-carboxylic acid | 4 |