F-group (family)
2003.1.8.2 PglD_N
Ligands and drugs
40
Member domains
15
with ligand contacts (≤ 4 Å)
37.5% of members
16
with DrugDomain annotations
40.0% of members
5
with a DrugBank compound
12.5% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2003.1.8.2 belongs to X-group 2003 Rossmann-like, which binds 8.9 ligand superclasses per 20 proteins, broader than 78% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB03103 | TYD | Thymidine-5'- Diphosphate | 1 |
| DB03435 | UDP | Uridine-5'-Diphosphate | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| CL | CHLORIDE ION | 5 |
| JB2 | GDP-perosamine | 3 |
| UD4 | UDP-2-acetamido-4-amino-2,4,6-trideoxy-alpha-D-glucopyranose | 2 |
| 0FX | dTDP-4-amino-4,6-dideoxyglucose | 1 |
| ACO | ACETYL COENZYME *A | 1 |
| JB3 | GDP-N-acetylperosamine | 1 |
| JBT | GDP-N-acetylperosamine-coenzyme A | 1 |
| NH9 | [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methyl (3R)-4-({3-[(2-{[(1S)-1-{[(2R,3S,4S,5R,6R)-4,5-dihydroxy-6-{[(R)-hydroxy{[(R)-hydroxy{[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)oxolan-2-yl]methoxy}phosphoryl]oxy}phosphoryl]oxy}-2-methyloxan-3-yl]amino}ethyl]sulfanyl}ethyl)amino]-3-oxopropyl}amino)-3-hydroxy-2,2-dimethyl-4-oxobutyl dihydrogen diphosphate (non-preferred name) | 1 |
| TYD | THYMIDINE-5'-DIPHOSPHATE | 1 |
| UDP | URIDINE-5'-DIPHOSPHATE | 1 |
| XQA | UDP-di-N-acetyl-alpha-bacillosamine | 1 |
| XQD | [(2~{R},3~{R},4~{S},5~{S},6~{R})-3-acetamido-5-[[(1~{S})-1-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethylsulfanyl]-1-oxidanyl-ethyl]amino]-6-methyl-4-oxidanyl-oxan-2-yl] [[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate | 1 |