F-group (family)
2005.1.1.1 tRNA-synt_1
Ligands and drugs
1,331
Member domains
98
with ligand contacts (≤ 4 Å)
7.4% of members
69
with DrugDomain annotations
5.2% of members
34
with a DrugBank compound
2.6% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2005.1.1.1 belongs to X-group 2005 HUP domain-like, which binds 8.2 ligand superclasses per 20 proteins, broader than 61% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00149 | LEU | Leucine | 12 |
| DB00410 | MRC | Mupirocin | 6 |
| DB00171 | ATP | ATP | 5 |
| DB02916 | LMS | [(2r,3s,4r,5r)-5-(6-Amino-9h-Purin-9-Yl)-3,4-Dihydroxytetrahydro-2-Furanyl]Methyl Sulfamate | 4 |
| DB00167 | — | Isoleucine | 3 |
| DB00131 | AMP | Adenosine phosphate | 1 |
| DB00161 | — | Valine | 1 |
| DB01755 | ILA | N-[Isoleucinyl]-N'-[adenosyl]-diaminosufone | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| LSS | 5'-O-(L-leucylsulfamoyl)adenosine | 16 |
| LEU | LEUCINE | 12 |
| ILA | N-[ISOLEUCINYL]-N'-[ADENOSYL]-DIAMINOSUFONE | 8 |
| MRC | MUPIROCIN | 8 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 7 |
| HGmetal | MERCURY (II) ION | 7 |
| LMS | [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDRO-2-FURANYL]METHYL SULFAMATE | 5 |
| TAR | D(-)-TARTARIC ACID | 5 |
| DCL | 2-AMINO-4-METHYL-PENTAN-1-OL | 4 |
| ILE | ISOLEUCINE | 4 |
| USB | [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (2~{S})-2-azanyl-4-methyl-pentanoate | 4 |
| ZNmetal | ZINC ION | 4 |
| CL | CHLORIDE ION | 3 |
| 84T | [(2S,4S,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-oxolan-2-yl]methoxy-N-[(2S,3R)-4-methyl-2,3-bis(oxidanyl)pentanoyl]phosphonamidic acid | 2 |
| GV6 | [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (2S,3S)-2-azanyl-3-methyl-pentanoate | 2 |
| GVU | (2E,4S,5S,6E,8E)-10-[(2S,3R,6S,8R,9S)-3-butyl-9-methyl-2-[(1E,3E)-3-methyl-5-oxidanyl-5-oxidanylidene-penta-1,3-dienyl]-3-(4-oxidanyl-4-oxidanylidene-butanoyl)oxy-1,7-dioxaspiro[5.5]undecan-8-yl]-4,8-dimethyl-5-oxidanyl-deca-2,6,8-trienoic acid | 2 |
| NAmetal | SODIUM ION | 2 |
| TLA | L(+)-TARTARIC ACID | 2 |
| AMP | ADENOSINE MONOPHOSPHATE | 1 |
| HQ5 | 5'-O-(N-(L-Leucyl)-Sulfamoyl)Cytidine | 1 |