F-group (family)
2005.1.1.2 tRNA-synt_1b
Ligands and drugs
1,278
Member domains
289
with ligand contacts (≤ 4 Å)
22.6% of members
269
with DrugDomain annotations
21.0% of members
206
with a DrugBank compound
16.1% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2005.1.1.2 belongs to X-group 2005 HUP domain-like, which binds 8.2 ligand superclasses per 20 proteins, broader than 61% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00150 | TRP | Tryptophan | 63 |
| DB00131 | AMP | Adenosine phosphate | 29 |
| DB01831 | TYM | Tryptophanyl-5'amp | 27 |
| DB00171 | ATP | ATP | 23 |
| DB00135 | TYR | Tyrosine | 21 |
| DB03325 | YSA | Tyrosyladenylate | 10 |
| DB03345 | BME | Mercaptoethanol | 7 |
| DB04537 | LTN | Tryptophanamide | 7 |
| DB03867 | NIY | 3-nitro-L-tyrosine | 5 |
| DB00356 | CLW | Chlorzoxazone | 2 |
| DB01758 | IYR | 3-Iodo-Tyrosine | 2 |
| DB01766 | NAL | Beta-(2-Naphthyl)-Alanine | 2 |
| DB04130 | 5OB | 5-Methoxybenzimidazole | 2 |
| DB07795 | FSE | Fisetin | 2 |
| DB08617 | TFQ | 4-(2,2,2-TRIFLUOROETHYL)-L-PHENYLALANINE | 2 |
| DB16833 | ADP | Adenosine disphosphate | 2 |
| DB02709 | STL | Resveratrol | 1 |
| DB03978 | — | — | 1 |
| DB06728 | ANL | Aniline | 1 |
| DB07205 | — | N6-ISOPENTENYL-ADENOSINE-5'-MONOPHOSPHATE | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| TRP | TRYPTOPHAN | 64 |
| TYM | TRYPTOPHANYL-5'AMP | 32 |
| AMP | ADENOSINE MONOPHOSPHATE | 28 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 24 |
| TYR | TYROSINE | 24 |
| NAmetal | SODIUM ION | 19 |
| MGmetal | MAGNESIUM ION | 18 |
| CL | CHLORIDE ION | 16 |
| TYE | 4-[(2S)-2-amino-3-hydroxypropyl]phenol | 12 |
| YSA | 5'-O-[N-(L-TYROSYL)SULFAMOYL]ADENOSINE | 11 |
| CLW | CHLORZOXAZONE | 10 |
| Kmetal | POTASSIUM ION | 9 |
| BME | BETA-MERCAPTOETHANOL | 7 |
| LTN | L-TRYPTOPHANAMIDE | 7 |
| CAmetal | CALCIUM ION | 6 |
| 66I | {(2R,3S,4R,5R)-5-[4-amino-3-(difluoromethoxy)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-dihydroxyoxolan-2-yl}methyl [(2S)-2-amino-3-(4-hydroxyphenyl)propanoyl]sulfamate (non-preferred name) | 5 |
| NIY | META-NITRO-TYROSINE | 5 |
| 5BX | (5S)-5-[(1R)-1-(1H-indol-3-yl)ethyl]-2-(methylamino)-1,3-oxazol-4(5H)-one | 4 |
| 96Z | beta-(1-azulenyl)-L-alanine | 4 |
| WSA | 5'-O-[(L-TRYPTOPHYLAMINO)SULFONYL]ADENOSINE | 4 |