F-group (family)
2005.1.1.5 tRNA-synt_1c
Ligands and drugs
979
Member domains
83
with ligand contacts (≤ 4 Å)
8.5% of members
46
with DrugDomain annotations
4.7% of members
35
with a DrugBank compound
3.6% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2005.1.1.5 belongs to X-group 2005 HUP domain-like, which binds 8.2 ligand superclasses per 20 proteins, broader than 61% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00142 | GLU | Glutamic acid | 12 |
| DB00171 | ATP | ATP | 11 |
| DB00131 | AMP | Adenosine phosphate | 5 |
| DB00130 | GLN | L-Glutamine | 2 |
| DB03345 | BME | Mercaptoethanol | 2 |
| DB02510 | — | 5'-O-(L-Prolylsulfamoyl)adenosine | 1 |
| DB02684 | — | 5'-O-(L-Cysteinylsulfamoyl)adenosine | 1 |
| DB16833 | ADP | Adenosine disphosphate | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 19 |
| GSU | O5'-(L-GLUTAMYL-SULFAMOYL)-ADENOSINE | 15 |
| GLU | GLUTAMIC ACID | 13 |
| CL | CHLORIDE ION | 12 |
| AMP | ADENOSINE MONOPHOSPHATE | 5 |
| GAU | (4S)-4-AMINO-5-HYDROXYPENTANOIC ACID | 4 |
| QSI | 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE | 4 |
| ZNmetal | ZINC ION | 4 |
| WVK | (2E)-N-(pyrimidin-2-yl)-3-(thiophen-2-yl)prop-2-enamide | 3 |
| BME | BETA-MERCAPTOETHANOL | 2 |
| COmetal | COBALT (II) ION | 2 |
| GLN | GLUTAMINE | 2 |
| GOM | GLUTAMOL-AMP | 2 |
| MGmetal | MAGNESIUM ION | 2 |
| ADP | ADENOSINE-5'-DIPHOSPHATE | 1 |
| CAmetal | CALCIUM ION | 1 |
| HGmetal | MERCURY (II) ION | 1 |
| MNmetal | MANGANESE (II) ION | 1 |