T-group (topology)
2007.1.2 Periplasmic binding protein-like I
Ligands and drugs
7,923
Member domains
2,424
with ligand contacts (≤ 4 Å)
30.6% of members
1,989
with DrugDomain annotations
25.1% of members
1,543
with a DrugBank compound
19.5% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2007.1.2 belongs to X-group 2007 Flavodoxin-like, which binds 8.9 ligand superclasses per 20 proteins, broader than 77% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00141 | NAG | N-Acetylglucosamine | 657 |
| DB00142 | GLU | Glutamic acid | 88 |
| DB02379 | BGC | Beta-D-Glucose | 52 |
| DB00150 | TRP | Tryptophan | 48 |
| DB13178 | INS | Inositol | 34 |
| DB04076 | HPA | Hypoxanthine | 32 |
| DB04286 | RIP | beta-D-Ribopyranose | 30 |
| DB00149 | LEU | Leucine | 28 |
| DB02999 | QUS | Quisqualic acid | 28 |
| DB02377 | GUN | Guanine | 22 |
| DB01862 | IPT | Isopropyl beta-D-thiogalactopyranoside | 20 |
| DB00640 | ADN | Adenosine | 18 |
| DB00160 | ALA | Alanine | 16 |
| DB00161 | VAL | Valine | 16 |
| DB04346 | PAV | (2r,4s)-2-Methyl-2,3,3,4-Tetrahydroxytetrahydrofuran | 16 |
| DB08297 | NPF | ORTHONITROPHENYL-BETA-D-FUCOPYRANOSIDE | 16 |
| DB02857 | GMP | Guanosine | 14 |
| DB03989 | ALL | D-Allopyranose | 12 |
| DB00145 | GLY | Glycine | 10 |
| DB00454 | — | — | 10 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| NAG | 2-acetamido-2-deoxy-beta-D-glucopyranose | 1,037 |
| CL | CHLORIDE ION | 195 |
| CAmetal | CALCIUM ION | 159 |
| NAmetal | SODIUM ION | 94 |
| TRP | TRYPTOPHAN | 72 |
| MGmetal | MAGNESIUM ION | 67 |
| GLU | GLUTAMIC ACID | 65 |
| Z99 | 2-[(1S,2S)-2-carboxycyclopropyl]-3-(9H-xanthen-9-yl)-D-alanine | 59 |
| QUS | (S)-2-AMINO-3-(3,5-DIOXO-[1,2,4]OXADIAZOLIDIN-2-YL)-PROPIONIC ACID | 56 |
| BGC | beta-D-glucopyranose | 52 |
| TCR | CYCLOMETHYLTRYPTOPHAN | 40 |
| ZNmetal | ZINC ION | 39 |
| INS | 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE | 34 |
| XYP | beta-D-xylopyranose | 33 |
| HPA | HYPOXANTHINE | 32 |
| RIP | beta-D-ribopyranose | 30 |
| GAL | beta-D-galactopyranose | 28 |
| LEU | LEUCINE | 28 |
| QEM | 4-[(1R,2S)-3-(4-benzylpiperidin-1-yl)-1-hydroxy-2-methylpropyl]phenol | 24 |
| GUN | GUANINE | 22 |