T-group (topology)
2008.1.1 Restriction endonuclease-like
Ligands and drugs
5,882
Member domains
891
with ligand contacts (≤ 4 Å)
15.1% of members
831
with DrugDomain annotations
14.1% of members
411
with a DrugBank compound
7.0% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2008.1.1 belongs to X-group 2008 Restriction endonuclease-like, which binds 7.5 ligand superclasses per 20 proteins, narrower than 52% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB14981 | IHP | Phytic acid | 21 |
| DB15675 | E4Z | Baloxavir | 21 |
| DB00171 | ATP | ATP | 14 |
| DB01643 | TMP | Thymidine monophosphate | 10 |
| DB03685 | U5P | Uridine monophosphate | 8 |
| DB06817 | RLT | Raltegravir | 5 |
| DB01672 | DBH | 2,3-Dihydroxy-Benzoic Acid | 4 |
| DB03345 | BME | Mercaptoethanol | 3 |
| DB00131 | AMP | Adenosine phosphate | 2 |
| DB00160 | ALA | Alanine | 2 |
| DB01812 | A3P | Adenosine 3',5'-diphosphate | 2 |
| DB02175 | MLA | Malonic acid | 2 |
| DB02210 | HEZ | Hexane-1,6-Diol | 2 |
| DB04119 | TBR | Hexatantalum Dodecabromide | 2 |
| DB04160 | PPV | Pyrophosphoric acid | 2 |
| DB09459 | TLA | L-tartaric acid | 2 |
| DB00133 | SER | Serine | 1 |
| DB00139 | SIN | Succinic acid | 1 |
| DB00142 | GLU | Glutamic acid | 1 |
| DB01992 | COA | Coenzyme A | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MNmetal | MANGANESE (II) ION | 380 |
| MGmetal | MAGNESIUM ION | 176 |
| CAmetal | CALCIUM ION | 136 |
| CL | CHLORIDE ION | 52 |
| NAmetal | SODIUM ION | 48 |
| QQ4 | Hexa Vinylpyrrolidone K15 | 41 |
| SF4 | IRON/SULFUR CLUSTER | 31 |
| E4Z | Baloxavir acid | 23 |
| XI7 | 2-4-DIOXO-4-PHENYLBUTANOIC ACID | 15 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 13 |
| 0N8 | (2Z)-4-[1-benzyl-4-(4-chlorobenzyl)piperidin-4-yl]-2-hydroxy-4-oxobut-2-enoic acid | 10 |
| TMP | THYMIDINE-5'-PHOSPHATE | 10 |
| MN3metal | MANGANESE (III) ION | 9 |
| U5P | URIDINE-5'-MONOPHOSPHATE | 8 |
| ZNmetal | ZINC ION | 8 |
| IHP | INOSITOL HEXAKISPHOSPHATE | 7 |
| BR | BROMIDE ION | 6 |
| A1J4F | 9-oxidanyl-6-[(1-phenylcyclohexyl)methyl]-2-propan-2-yl-3,4-dihydropyrazino[1,2-c]pyrimidine-1,8-dione | 5 |
| RLT | N-(4-fluorobenzyl)-5-hydroxy-1-methyl-2-(1-methyl-1-{[(5-methyl-1,3,4-oxadiazol-2-yl)carbonyl]amino}ethyl)-6-oxo-1,6-dihydropyrimidine-4-carboxamide | 5 |
| 0N7 | 2-hydroxyisoquinoline-1,3(2H,4H)-dione | 4 |