T-group (topology)
207.2.1 Pectin lyase-like
Ligands and drugs
2,920
Member domains
478
with ligand contacts (≤ 4 Å)
16.4% of members
425
with DrugDomain annotations
14.6% of members
249
with a DrugBank compound
8.5% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 207.2.1 belongs to X-group 207 Single-stranded right-handed beta-helix, which binds 6.1 ligand superclasses per 20 proteins, narrower than 73% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00141 | NAG | N-Acetylglucosamine | 26 |
| DB03511 | ADA | alpha-D-galacturonic acid | 14 |
| DB03652 | GTR | beta-D-Galactopyranuronic acid | 12 |
| DB02379 | BGC | Beta-D-Glucose | 10 |
| DB03389 | XYS | alpha-D-Xylopyranose | 4 |
| DB04564 | LGC | Gluconolactone | 4 |
| DB03309 | NHE | N-cyclohexyltaurine | 2 |
| DB03345 | BME | Mercaptoethanol | 2 |
| DB03556 | PE5 | 2-(2-{2-[2-(2-{2-[2-(2-Ethoxy-Ethoxy)-Ethoxy]-Ethoxy}-Ethoxy)-Ethoxy]-Ethoxy}-Ethoxy)-Ethanol, Polyethyleneglycol Peg400 | 2 |
| DB04386 | HLA | 4,6-O-(1-Carboxyethylidene)-Beta-D-Glucose | 2 |
| DB02159 | PGR | (R)-Propylene glycol | 1 |
| DB02676 | B3P | 2-[3-(2-Hydroxy-1,1-Dihydroxymethyl-Ethylamino)-Propylamino]-2-Hydroxymethyl-Propane-1,3-Diol | 1 |
| DB09157 | CO2 | Carbon dioxide | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| CAmetal | CALCIUM ION | 128 |
| CL | CHLORIDE ION | 61 |
| NAmetal | SODIUM ION | 60 |
| ZNmetal | ZINC ION | 31 |
| MGmetal | MAGNESIUM ION | 25 |
| NAG | 2-acetamido-2-deoxy-beta-D-glucopyranose | 24 |
| 9F3 | (2R,3'S,4'S,4aR,5'R,6R,7R,7aS)-4a,5',6-tris(hydroxymethyl)spiro[3,6,7,7a-tetrahydrofuro[2,3-b][1,4]dioxine-2,2'-oxolane]-3',4',7-triol | 12 |
| ADA | alpha-D-galactopyranuronic acid | 12 |
| GTR | beta-D-galactopyranuronic acid | 11 |
| MAN | alpha-D-mannopyranose | 11 |
| MNmetal | MANGANESE (II) ION | 10 |
| MRD | (4R)-2-METHYLPENTANE-2,4-DIOL | 10 |
| 2PO | PHOSPHONATE | 9 |
| BGC | beta-D-glucopyranose | 9 |
| Kmetal | POTASSIUM ION | 8 |
| MLA | MALONIC ACID | 7 |
| P6G | HEXAETHYLENE GLYCOL | 7 |
| CUmetal | COPPER (II) ION | 6 |
| NImetal | NICKEL (II) ION | 6 |
| LGC | D-glucono-1,5-lactone | 4 |