H-group (homology)
245.1 Ribonuclease PH domain 2
Ligands and drugs
2,825
Member domains
141
with ligand contacts (≤ 4 Å)
5.0% of members
123
with DrugDomain annotations
4.4% of members
92
with a DrugBank compound
3.3% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 245.1 belongs to X-group 245 Ribonuclease PH domain 2-like, which has 12 proteins with classified ligands. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB16833 | ADP | Adenosine disphosphate | 13 |
| DB00131 | AMP | Adenosine phosphate | 7 |
| DB04160 | PPV | Pyrophosphoric acid | 6 |
| DB03685 | U5P | Uridine monophosphate | 5 |
| DB04237 | TAM | Tris(Hydroxyethyl)Aminomethane | 2 |
| DB03435 | UDP | Uridine-5'-Diphosphate | 1 |
| DB04352 | RP5 | beta-D-Ribose-5-phosphate | 1 |
| DB04555 | CDP | Cytidine-5'-Diphosphate | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MGmetal | MAGNESIUM ION | 16 |
| ADP | ADENOSINE-5'-DIPHOSPHATE | 13 |
| WO4 | TUNGSTATE(VI)ION | 13 |
| AMP | ADENOSINE MONOPHOSPHATE | 7 |
| PPV | PYROPHOSPHATE | 6 |
| U5P | URIDINE-5'-MONOPHOSPHATE | 5 |
| BR | BROMIDE ION | 2 |
| CDmetal | CADMIUM ION | 2 |
| TAM | TRIS(HYDROXYETHYL)AMINOMETHANE | 2 |
| CDP | CYTIDINE-5'-DIPHOSPHATE | 1 |
| MNmetal | MANGANESE (II) ION | 1 |
| NAmetal | SODIUM ION | 1 |
| RP5 | 5-O-phosphono-beta-D-ribofuranose | 1 |
| UDP | URIDINE-5'-DIPHOSPHATE | 1 |