T-group (topology)
2485.3.1 Major capsid protein gp5
Ligands and drugs
2,953
Member domains
123
with ligand contacts (≤ 4 Å)
4.2% of members
108
with DrugDomain annotations
3.7% of members
90
with a DrugBank compound
3.0% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2485.3.1 belongs to X-group 2485 Thioredoxin-like, which binds 8.0 ligand superclasses per 20 proteins, broader than 58% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB03247 | FMN | Flavin mononucleotide | 62 |
| DB00140 | RBF | Riboflavin | 7 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| FMN | FLAVIN MONONUCLEOTIDE | 62 |
| NImetal | NICKEL (II) ION | 19 |
| CL | CHLORIDE ION | 8 |
| RBF | RIBOFLAVIN | 6 |
| 12P | DODECAETHYLENE GLYCOL | 1 |
| AUC | GOLD (I) CYANIDE ION | 1 |