T-group (topology)
2492.1.1 Cytidine deaminase-like
Ligands and drugs
4,579
Member domains
903
with ligand contacts (≤ 4 Å)
19.7% of members
729
with DrugDomain annotations
15.9% of members
284
with a DrugBank compound
6.2% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2492.1.1 belongs to X-group 2492 Cytidine deaminase-like, which binds 7.2 ligand superclasses per 20 proteins, narrower than 57% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB14981 | IHP | Phytic acid | 25 |
| DB01700 | AMZ | AICA ribonucleotide | 23 |
| DB02745 | URI | Uridine | 19 |
| DB03798 | DCM | 2'-Deoxycytidine-5'-Monophosphate | 17 |
| DB03800 | DU | Deoxyuridine monophosphate | 12 |
| DB03562 | THU | Tetrahydrodeoxyuridine | 10 |
| DB02452 | TTP | Thymidine 5'-triphosphate | 9 |
| DB01667 | AZG | 8-azaguanine | 8 |
| DB01643 | TMP | Thymidine monophosphate | 7 |
| DB02097 | CTN | Cytidine | 7 |
| DB03258 | DCP | 2'-Deoxycytidine 5'-triphosphate | 5 |
| DB03442 | 326 | Acid yellow 54 free acid | 5 |
| DB04057 | MS1 | N-[4-([(2-Amino-4-oxo-1,4-dihydropyrido[3,2-d]pyrimidin-6-yl)methyl]{(2E)-3-[4-carbamoyl-1-(5-O-phosphono-beta-D-ribofuranosyl)-1H-imidazol-5-yl]-2-propenoyl}amino)benzoyl]-L-glutamic acid | 5 |
| DB03570 | 144 | Tris-Hydroxymethyl-Methyl-Ammonium | 4 |
| DB03939 | HPY | (4S)-4-hydroxy-3,4-dihydro-2(1H)-pyrimidinone | 4 |
| DB04280 | DDN | 3,4-Dihydro-2'-deoxyuridine-5'-monophosphate | 4 |
| DB02210 | HEZ | Hexane-1,6-Diol | 3 |
| DB00640 | ADN | Adenosine | 2 |
| DB01849 | DUC | Dihydrouracil | 2 |
| DB01972 | 5GP | Guanosine-5'-Monophosphate | 2 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| ZNmetal | ZINC ION | 766 |
| CL | CHLORIDE ION | 50 |
| IHP | INOSITOL HEXAKISPHOSPHATE | 42 |
| Kmetal | POTASSIUM ION | 35 |
| AMZ | AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE | 34 |
| MGmetal | MAGNESIUM ION | 27 |
| URI | URIDINE | 19 |
| DCM | 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE | 16 |
| CAmetal | CALCIUM ION | 14 |
| DU | 2'-DEOXYURIDINE-5'-MONOPHOSPHATE | 12 |
| THU | TETRAHYDRODEOXYURIDINE | 10 |
| TTP | THYMIDINE-5'-TRIPHOSPHATE | 9 |
| 4UO | 2,3-dihydroxanthosine | 8 |
| 8UM | 5-[(5S)-5-ethyl-5-methyl-6-oxo-1,4,5,6-tetrahydropyridin-3-yl]-N-(6-fluoro-1-oxo-1,2-dihydroisoquinolin-7-yl)thiophene-2-sulfonamide | 8 |
| 8US | N-(6-fluoro-1-oxo-1,2-dihydroisoquinolin-7-yl)-5-[(3R)-3-hydroxypyrrolidin-1-yl]thiophene-2-sulfonamide | 8 |
| AZG | 5-AMINO-1H-[1,2,3]TRIAZOLO[4,5-D]PYRIMIDIN-7-OL | 8 |
| WHC | 1~{H}-1,3,5-triazine-2,4-dione | 8 |
| CTN | 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE | 7 |
| TMP | THYMIDINE-5'-PHOSPHATE | 7 |
| BW2 | N-(4-{[(2-AMINO-4-OXO-3,4-DIHYDROQUINAZOLIN-6-YL)AMINO]SULFONYL}BENZOYL)GLUTAMIC ACID | 6 |