ECOD
T-group (topology)

2498.1.1 Metalloproteases ("zincins") catalytic domain

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Ligands and drugs

7,895
Member domains
2,756
with ligand contacts (≤ 4 Å)
34.9% of members
2,422
with DrugDomain annotations
30.7% of members
1,570
with a DrugBank compound
19.9% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 2498.1.1 belongs to X-group 2498 Zincin-like, which binds 9.5 ligand superclasses per 20 proteins, broader than 89% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB00141NAGN-Acetylglucosamine503
DB00123LYSLysine66
DB00161VALValine54
DB04349PGO(S)-propane-1,2-diol32
DB00786—Marimastat28
DB00551HAEAcetohydroxamic acid27
DB11326BO3Boric acid21
DB03424BESUbenimex20
DB03709BCNBicine17
DB00125ARGArginine14
DB00128ASPAspartic acid14
DB02557RDFPhosphoramidon14
DB03880BATBatimastat13
DB00149LEULeucine12
DB08271NGHN-ISOBUTYL-N-[4-METHOXYPHENYLSULFONYL]GLYCYL HYDROXAMIC ACID12
DB00133SERSerine11
DB00172PROProline11
DB02255GM6Ilomastat11
DB00142GLUGlutamic acid10
DB00145GLYGlycine8

Most frequently bound compounds

PDB ligandNameDomains in contact
ZNmetalZINC ION2,400
CAmetalCALCIUM ION945
NAG2-acetamido-2-deoxy-beta-D-glucopyranose683
CLCHLORIDE ION326
NAmetalSODIUM ION113
MGmetalMAGNESIUM ION94
LYSLYSINE69
VALVALINE55
PGOS-1,2-PROPANEDIOL37
P6GHEXAETHYLENE GLYCOL35
NImetalNICKEL (II) ION30
HAEACETOHYDROXAMIC ACID27
BO3BORIC ACID26
BES2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID24
CDmetalCADMIUM ION24
P52Nalpha-[(2S)-2-{[[(1R)-1-amino-3-phenylpropyl](hydroxy)phosphoryl]methyl}-4-methylpentanoyl]-L-tryptophanamide24
KmetalPOTASSIUM ION22
YBmetalYTTERBIUM (III) ION20
BCNBICINE18
INNN-{(2R)-2-[2-(hydroxyamino)-2-oxoethyl]-4-methylpentanoyl}-3-methyl-L-valyl-N-(2-aminoethyl)-L-alaninamide16