F-group (family)
289.1.1.1 Pep_deformylase
Ligands and drugs
799
Member domains
314
with ligand contacts (≤ 4 Å)
39.3% of members
309
with DrugDomain annotations
38.7% of members
189
with a DrugBank compound
23.7% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 289.1.1.1 belongs to X-group 289 Peptide deformylase, which binds 8.3 ligand superclasses per 20 proteins, broader than 63% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB04310 | BB2 | 2-[(Formyl-Hydroxy-Amino)-Methyl]-Heptanoic Acid [1-(2-Hydroxymethyl-Pyrrolidine-1-Carbonyl)-2-Methyl-Propyl]-Amide | 70 |
| DB02652 | LHY | L-[(N-Hydroxyamino)Carbonyl]Phenylalanine | 8 |
| DB04368 | BB1 | Bb-3497 | 4 |
| DB08523 | SB7 | [HYDROXY(3-PHENYLPROPYL)AMINO]METHANOL | 4 |
| DB00160 | ALA | Alanine | 2 |
| DB02036 | GNR | 2-(3,4-Dihydro-3-Oxo-2h-Benzo[B][1,4]Thiazin-2-Yl)-N-Hydroxyacetamide | 2 |
| DB02276 | MLN | (S)-2-(Phosphonoxy)Caproyl-L-Leucyl-P-Nitroanilide | 2 |
| DB02625 | BRR | (2r)-2-{[Formyl(Hydroxy)Amino]Methyl}Hexanoic Acid | 2 |
| DB02810 | MHA | N-(2-Acetamido)Iminodiacetic Acid | 2 |
| DB03648 | BL5 | (2S,2'S)-2,2'-(1,2-Hydrazinediylbis{methylene[(2S)-1-oxo-2,1-hexanediyl]imino})bis(6-amino-N-phenylhexanamide) | 2 |
| DB04447 | DTT | 1,4-Dithiothreitol | 2 |
| DB00134 | MET | Methionine | 1 |
| DB00145 | GLY | Glycine | 1 |
| DB03345 | BME | Mercaptoethanol | 1 |
| DB04464 | FME | N-Formylmethionine | 1 |
| DB08310 | NVC | N-[(2R)-2-{[(2S)-2-(1,3-benzoxazol-2-yl)pyrrolidin-1-yl]carbonyl}hexyl]-N-hydroxyformamide | 1 |
| DB08524 | SB8 | 2-(3-BENZOYLPHENOXY)ETHYL(HYDROXY)FORMAMIDE | 1 |
| DB08525 | SB9 | HYDROXY[3-(6-METHYLPYRIDIN-2-YL)PROPYL]FORMAMIDE | 1 |
| DB08753 | Y12 | 4-{(1E)-3-OXO-3-[(2-PHENYLETHYL)AMINO]PROP-1-EN-1-YL}-1,2-PHENYLENE DIACETATE | 1 |
| DB08754 | Y13 | N-Caffeoyltyramine | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| ZNmetal | ZINC ION | 151 |
| NImetal | NICKEL (II) ION | 91 |
| BB2 | ACTINONIN | 75 |
| COmetal | COBALT (II) ION | 40 |
| CDmetal | CADMIUM ION | 15 |
| FEmetal | FE (III) ION | 14 |
| NAmetal | SODIUM ION | 13 |
| CL | CHLORIDE ION | 10 |
| FE2metal | FE (II) ION | 9 |
| LHY | L-[(N-HYDROXYAMINO)CARBONYL]PHENYLALANINE | 8 |
| K1U | (3R)-3-benzyl-4-oxo-4-[(2-oxo-2-phenylethyl)sulfanyl]butanoic acid | 7 |
| K3U | S-(2-oxo-2-phenylethyl) (2R)-2-benzyl-4,4,4-trifluorobutanethioate | 7 |
| K2U | (3~{R},4~{R})-4-oxidanyl-3-(phenylmethyl)-4-(phenylmethylsulfanyl)butanoic acid | 6 |
| H2S | HYDROSULFURIC ACID | 4 |
| MGmetal | MAGNESIUM ION | 4 |
| SB7 | [HYDROXY(3-PHENYLPROPYL)AMINO]METHANOL | 4 |
| BB1 | 2-[(FORMYL-HYDROXY-AMINO)-METHYL]-HEXANOIC ACID (1-DIMETHYLCARBAMOYL-2,2-DIMETHYL-PROPYL)-AMIDE | 3 |
| PN3 | tert-butyl {(2S)-1-[formyl(hydroxy)amino]-3-phenylpropan-2-yl}carbamate | 3 |
| 2BB | (2S,3R)-N~4~-[(1S)-1-(dimethylcarbamoyl)-2,2-dimethylpropyl]-N~1~,2-dihydroxy-3-(2-methylpropyl)butanediamide | 2 |
| ALA | ALANINE | 2 |