T-group (topology)
297.1.1 YrdC/RibB
Ligands and drugs
807
Member domains
118
with ligand contacts (≤ 4 Å)
14.6% of members
87
with DrugDomain annotations
10.8% of members
59
with a DrugBank compound
7.3% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 297.1.1 belongs to X-group 297 YrdC/RibB, which has 14 proteins with classified ligands. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00156 | THR | Threonine | 11 |
| DB04496 | RES | 4-Phospho-D-erythronohydroxamic acid | 4 |
| DB02596 | APC | alpha,beta-Methyleneadenosine 5'-triphosphate | 3 |
| DB04034 | 5SP | Ribulose-5-Phosphate | 3 |
| DB00131 | AMP | Adenosine phosphate | 1 |
| DB00171 | ATP | ATP | 1 |
| DB01923 | N3U | L-Xylulose 5-Phosphate | 1 |
| DB02053 | R5P | Ribose-5-phosphate | 1 |
| DB09459 | TLA | L-tartaric acid | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MGmetal | MAGNESIUM ION | 22 |
| THR | THREONINE | 15 |
| ZNmetal | ZINC ION | 14 |
| 5RP | RIBULOSE-5-PHOSPHATE | 13 |
| CP | PHOSPHORIC ACID MONO(FORMAMIDE)ESTER | 12 |
| MNmetal | MANGANESE (II) ION | 9 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 5 |
| CAmetal | CALCIUM ION | 5 |
| DPO | DIPHOSPHATE | 5 |
| Kmetal | POTASSIUM ION | 4 |
| POP | PYROPHOSPHATE 2- | 4 |
| RES | 4-PHOSPHO-D-ERYTHRONOHYDROXAMIC ACID | 4 |
| TXA | threonylcarbamoyladenylate | 4 |
| U6A | N-carboxy-L-threonine | 4 |
| 5SP | 5-O-phosphono-D-xylulose | 3 |
| APC | DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER | 3 |
| CL | CHLORIDE ION | 3 |
| ADP | ADENOSINE-5'-DIPHOSPHATE | 2 |
| ANP | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | 2 |
| AUmetal | GOLD ION | 2 |