T-group (topology)
304.10.1 RuBisCO, large subunit, small (N-terminal) domain
Ligands and drugs
1,628
Member domains
520
with ligand contacts (≤ 4 Å)
31.9% of members
398
with DrugDomain annotations
24.4% of members
72
with a DrugBank compound
4.4% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 304.10.1 belongs to X-group 304 Alpha-beta plaits, which binds 8.8 ligand superclasses per 20 proteins, broader than 75% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB02076 | 6PG | 6-phospho-D-gluconic acid | 8 |
| DB04510 | 3PG | 3-phospho-D-glyceric acid | 4 |
| DB06881 | 1AE | (1Z)-2-HYDROXY-3-OXOHEX-1-EN-1-YL DIHYDROGEN PHOSPHATE | 2 |
| DB02338 | NDP | NADPH | 1 |
| DB03843 | FOR | Formaldehyde | 1 |
| DB16829 | A8S | Abscisic Acid | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| CAP | 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE | 392 |
| MGmetal | MAGNESIUM ION | 322 |
| RUB | RIBULOSE-1,5-DIPHOSPHATE | 18 |
| CL | CHLORIDE ION | 12 |
| CAmetal | CALCIUM ION | 11 |
| 6PG | 6-PHOSPHOGLUCONIC ACID | 8 |
| XBP | XYLULOSE-1,5-BISPHOSPHATE | 8 |
| XDP | D-XYLULOSE-2,2-DIOL-1,5-BISPHOSPHATE | 8 |
| MNmetal | MANGANESE (II) ION | 7 |
| 3PG | 3-PHOSPHOGLYCERIC ACID | 4 |
| 1AE | (1Z)-2-HYDROXY-3-OXOHEX-1-EN-1-YL DIHYDROGEN PHOSPHATE | 2 |
| Kmetal | POTASSIUM ION | 2 |
| NDP | NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | 2 |
| A8S | (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid | 1 |