F-group (family)
314.1.1.3 tRNA-synt_2d
Ligands and drugs
905
Member domains
140
with ligand contacts (≤ 4 Å)
15.5% of members
125
with DrugDomain annotations
13.8% of members
63
with a DrugBank compound
7.0% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 314.1.1.3 belongs to X-group 314 Class II aaRS and biotin synthetases, which binds 8.7 ligand superclasses per 20 proteins, broader than 73% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00171 | ATP | ATP | 20 |
| DB00120 | PHE | Phenylalanine | 18 |
| DB00131 | AMP | Adenosine phosphate | 5 |
| DB07817 | GAX | 1-{3-[(4-pyridin-2-ylpiperazin-1-yl)sulfonyl]phenyl}-3-(1,3-thiazol-2-yl)urea | 5 |
| DB04522 | SEP | Dexfosfoserine | 3 |
| DB00123 | LYS | Lysine | 1 |
| DB00135 | TYR | Tyrosine | 1 |
| DB02159 | PGR | (R)-Propylene glycol | 1 |
| DB02210 | HEZ | Hexane-1,6-Diol | 1 |
| DB03325 | YSA | Tyrosyladenylate | 1 |
| DB07365 | ALN | 1-Naphthyl-L-alanine | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MGmetal | MAGNESIUM ION | 70 |
| ANP | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | 25 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 20 |
| PHE | PHENYLALANINE | 19 |
| Kmetal | POTASSIUM ION | 12 |
| NO4 | N-benzyl-2-(cyclohex-1-en-1-yl)ethan-1-amine | 6 |
| SEP | PHOSPHOSERINE | 6 |
| AMP | ADENOSINE MONOPHOSPHATE | 5 |
| GAX | 1-{3-[(4-pyridin-2-ylpiperazin-1-yl)sulfonyl]phenyl}-3-(1,3-thiazol-2-yl)urea | 5 |
| 2L5 | 2-chloro-L-phenylalanine | 4 |
| POP | PYROPHOSPHATE 2- | 4 |
| MNmetal | MANGANESE (II) ION | 3 |
| W5Y | 5'-O-(L-phenylalanylsulfamoyl)adenosine | 3 |
| 2AQ | QUINOLIN-2-AMINE | 2 |
| 2NL | 2-{3-[(4-chloropyridin-2-yl)amino]phenoxy}-N-methylacetamide | 2 |
| 2NM | 3-(3-methoxyphenyl)-5-(trifluoromethyl)-1H-pyrazole | 2 |
| 2U9 | N-[(3S)-1,1-dioxidotetrahydrothiophen-3-yl]-2-[(4-methylphenoxy)methyl]-1,3-thiazole-4-carboxamide | 2 |
| 4OG | 3-(1-benzothiophen-3-yl)-L-alanine | 2 |
| AX7 | 1H-benzimidazol-2-amine | 2 |
| B79 | (8R,9S,10S)-10-[(dimethylamino)methyl]-N-(4-methoxyphenyl)-9-[4-(2-phenylethynyl)phenyl]-1,6-diazabicyclo[6.2.0]decane-6-carboxamide | 2 |