X-group (possible homology)

315 Tautomerase/MIF-like

Ligands and drugs

1,574
Member domains
763
with ligand contacts (≤ 4 Å)
48.5% of members
650
with DrugDomain annotations
41.3% of members
542
with a DrugBank compound
34.4% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

ClassyFire chemical superclasses of the ligands bound by this X-group's proteins, from DrugDomain annotations.

25
Proteins with classified ligands
11
Superclasses bound (of 23)
10.2
Superclasses per 20 proteins
broader than 95% of the 256 X-groups with enough proteins to compare (median 7.6)

The raw number of superclasses rises with the number of proteins sampled; the per-20 value compares X-groups at equal depth.

SuperclassProteinsExpected
0.25×observed / expected4×
RatioSignificance
Homogeneous non-metal compounds105.31.89×q = 0.05
Homogeneous metal compounds512.10.41×q = 9.3e-3
Nucleosides, nucleotides, and analogues06.80q = 1.3e-3
Phenylpropanoids and polyketides40.57.80×not tested
Benzenoids51.82.77×not tested
Organic acids and derivatives83.82.10×not tested
Organosulfur compounds10.51.97×not tested
Mixed metal/non-metal compounds10.51.93×not tested
Organoheterocyclic compounds53.81.32×not tested
Organic nitrogen compounds10.81.27×not tested
Organic oxygen compounds34.90.61×not tested
Lipids and lipid-like molecules12.70.36×not tested
enriched (q < 0.05)depleted (q < 0.05)not significantnot tested (expected < 5)

Unit: a protein (UniProt accession) with a ligand-binding domain in this X-group, counted once per superclass. Expected counts use each superclass's frequency across all ligand-binding X-groups; significance is Fisher's exact test with Benjamini–Hochberg correction. Buffers and crystallization additives are excluded. ECOD v295.2; the method follows the ECOD 2027 update, whose published figures used a slightly different artifact filter.

DrugBank compounds

DrugBankPDB ligandNameDomains
DB02175MLAMalonic acid12
DB036883OHHydracrylic acid12
DB07718ENO4-Hydroxyphenylpyruvic acid8
DB02384FHC(E)-2-Fluoro-P-Hydroxycinnamate7
DB09459TLAL-tartaric acid6
DB02005OXP2-Oxo-3-Pentenoic Acid5
DB03350NCOCobalt hexammine ion5
DB00695FUNFurosemide3
DB01148HWLFlavoxate3
DB02375MYCMyricetin3
DB02676B3P2-[3-(2-Hydroxy-1,1-Dihydroxymethyl-Ethylamino)-Propylamino]-2-Hydroxymethyl-Propane-1,3-Diol3
DB02728YZ97-Hydroxy-2-Oxo-Chromene-3-Carboxylic Acid Ethyl Ester3
DB03297PMSBenzylsulfonic acid3
DB07888HDI3-(4-HYDROXYPHENYL)-4,5-DIHYDRO-5-ISOXAZOLE-ACETIC ACID METHYL ESTER3
DB08333OX34-HYDROXYBENZALDEHYDE O-(CYCLOHEXYLCARBONYL)OXIME3
DB08334OX43-FLUORO-4-HYDROXYBENZALDEHYDE O-(CYCLOHEXYLCARBONYL)OXIME3
DB08335OX54-HYDROXYBENZALDEHYDE O-(3,3-DIMETHYLBUTANOYL)OXIME3
DB08765ZEC6-HYDROXY-1,3-BENZOTHIAZOLE-2-SULFONAMIDE3
DB00142GLUGlutamic acid2
DB01880DHC3,4-Dihydroxycinnamic Acid2

Most frequently bound compounds

PDB ligandNameDomains in contact
CLCHLORIDE ION103
NAmetalSODIUM ION30
7DH(3E)-5-hydroxy-2-oxopent-3-enoic acid17
6Y55-fluoranyl-2-oxidanylidene-pentanoic acid15
3OH3-HYDROXY-PROPANOIC ACID14
3TX4-[4-(quinolin-2-yl)-1H-1,2,3-triazol-1-yl]phenol12
ENO3-(4-HYDROXY-PHENYL)PYRUVIC ACID12
MLAMALONIC ACID12
PR63-chloro-3-oxopropanoic acid10
RW14-phenylpyrimidine10
A1BXYprop-2-ynoic acid9
EN1(2E)-2-hydroxy-3-(4-hydroxyphenyl)prop-2-enoic acid9
ZNmetalZINC ION8
A1AWY3-bromo-3-oxopropanoic acid7
FHC2-FLUORO-3-(4-HYDROXYPHENYL)-2E-PROPENEOATE7
9BEN-benzylthioformamide6
A1IZH(1~{Z},2~{S})-1-[(~{E})-3-(2-hydroxyphenyl)prop-2-enylidene]-1$l^{4}-azolidine-2-carbaldehyde6
AVR(2R)-2-amino-1-[2-(1-methylethyl)pyrazolo[1,5-a]pyridin-3-yl]propan-1-one6
LE2N-(2-phenylethyl)thioformamide6
TLAL(+)-TARTARIC ACID6