ECOD
T-group (topology)

316.1.1 Nucleotidyltransferase

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Ligands and drugs

4,822
Member domains
1,285
with ligand contacts (≤ 4 Å)
26.6% of members
1,243
with DrugDomain annotations
25.8% of members
806
with a DrugBank compound
16.7% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 316.1.1 belongs to X-group 316 Nucleotidyltransferase-like, which binds 7.3 ligand superclasses per 20 proteins, narrower than 56% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB04160PPVPyrophosphoric acid108
DB00171ATPATP66
DB02431CTPCytidine-5'-Triphosphate51
DB02596APCalpha,beta-Methyleneadenosine 5'-triphosphate48
DB04005UTPUridine 5'-triphosphate40
DB01965DUP2'-Deoxyuridine 5'-alpha,beta-imido-triphosphate39
DB02181DGT2'-Deoxyguanosine-5'-Triphosphate38
DB03258DCP2'-Deoxycytidine 5'-triphosphate38
DB02452TTPThymidine 5'-triphosphate36
DB03222DTPdATP30
DB04137GTPGuanosine-5'-Triphosphate29
DB00131AMPAdenosine phosphate18
DB00452NMYFramycetin15
DB03085GOAGlycolic acid15
DB018603ATCordycepin Triphosphate13
DB16833ADPAdenosine disphosphate13
DB00141NAGN-Acetylglucosamine12
DB019725GPGuanosine-5'-Monophosphate9
DB03798DC2'-Deoxycytidine-5'-Monophosphate9
DB04555CDPCytidine-5'-Diphosphate8

Most frequently bound compounds

PDB ligandNameDomains in contact
MGmetalMAGNESIUM ION595
NAmetalSODIUM ION184
CLCHLORIDE ION183
MNmetalMANGANESE (II) ION182
ZNmetalZINC ION167
PPVPYROPHOSPHATE108
CAmetalCALCIUM ION87
ATPADENOSINE-5'-TRIPHOSPHATE67
CTPCYTIDINE-5'-TRIPHOSPHATE52
APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER48
UTPURIDINE 5'-TRIPHOSPHATE41
DUP2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE39
DCP2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE38
DGT2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE38
TTPTHYMIDINE-5'-TRIPHOSPHATE36
DTP2'-DEOXYADENOSINE 5'-TRIPHOSPHATE30
GTPGUANOSINE-5'-TRIPHOSPHATE29
DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE22
8DG8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE20
0KX2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine19