X-group (possible homology)

3232 PB2 '627' domain-related

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Ligands and drugs

149

Member domains

with ligand contacts (≤ 4 Å)

17.4% of members

with DrugDomain annotations

12.1% of members

with a DrugBank compound

9.4% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

ClassyFire chemical superclasses of the ligands bound by this X-group's proteins, from DrugDomain annotations.

Proteins with classified ligands

Superclasses bound (of 23)

—

Superclasses per 20 proteins

fewer than 20 proteins: too few to compare at equal depth

The raw number of superclasses rises with the number of proteins sampled; the per-20 value compares X-groups at equal depth.

Superclass	Proteins	Expected	Ratio	Significance
Mixed metal/non-metal compounds	1	0.1	9.66×	not tested
Nucleosides, nucleotides, and analogues	4	1.4	2.94×	not tested
Homogeneous non-metal compounds	2	1.1	1.89×	not tested

enriched (q < 0.05)depleted (q < 0.05)not significantnot tested (expected < 5)

Unit: a protein (UniProt accession) with a ligand-binding domain in this X-group, counted once per superclass. Expected counts use each superclass's frequency across all ligand-binding X-groups; significance is Fisher's exact test with Benjamini–Hochberg correction. Buffers and crystallization additives are excluded. ECOD v295.2; the method follows the ECOD 2027 update, whose published figures used a slightly different artifact filter.

DrugBank compounds

DrugBank	PDB ligand	Name	Domains
DB01649	GTA	7-methyl-GpppA	7
DB03358	MGT	7-Methyl-7,8-dihydroguanosine 5'-(tetrahydrogen triphosphate)	3
DB11326	BO3	Boric acid	1

Most frequently bound compounds

PDB ligand	Name	Domains in contact
GTA	P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE	7
MGT	7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE	5
CL	CHLORIDE ION	2
G1G	7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-(2'-O-METHYL)-GUANOSINE	2
21G	(2S,3S)-3-[[5-fluoranyl-2-(5-fluoranyl-1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-4-yl]amino]bicyclo[2.2.2]octane-2-carboxylic acid	1
BO3	BORIC ACID	1
IC5	[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate	1
IOD	IODIDE ION	1