T-group (topology)
327.17.1 S-adenosylmethionine synthetase
Ligands and drugs
2,864
Member domains
640
with ligand contacts (≤ 4 Å)
22.3% of members
600
with DrugDomain annotations
20.9% of members
492
with a DrugBank compound
17.2% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 327.17.1 belongs to X-group 327 Alpha-lytic protease prodomain-like, which binds 7.9 ligand superclasses per 20 proteins, broader than 54% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00118 | SAM | Ademetionine | 220 |
| DB03075 | PPK | (Diphosphono)Aminophosphonic Acid | 118 |
| DB00640 | ADN | Adenosine | 45 |
| DB03896 | 3PO | Triphosphoric acid | 35 |
| DB00134 | MET | Methionine | 28 |
| DB03434 | MPO | 3-(N-morpholino)propanesulfonic acid | 25 |
| DB00171 | ATP | ATP | 18 |
| DB02282 | MTA | 5'-S-methyl-5'-thioadenosine | 18 |
| DB02596 | APC | alpha,beta-Methyleneadenosine 5'-triphosphate | 12 |
| DB00131 | AMP | Adenosine phosphate | 11 |
| DB03611 | AMB | L-2-amino-4-methoxy-cis-but-3-enoic acid | 8 |
| DB03909 | ACP | Adenosine-5'-[Beta, Gamma-Methylene]Triphosphate | 8 |
| DB14078 | MDN | Medronic acid | 8 |
| DB16833 | ADP | Adenosine disphosphate | 8 |
| DB03191 | LIS | 3-Oxiran-2ylalanine | 6 |
| DB00160 | ALA | Alanine | 4 |
| DB02159 | PGR | (R)-Propylene glycol | 4 |
| DB02893 | MED | D-Methionine | 4 |
| DB02175 | MLA | Malonic acid | 3 |
| DB02343 | P3G | 3,6,9,12,15-Pentaoxaheptadecane | 3 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| SAM | S-ADENOSYLMETHIONINE | 288 |
| MGmetal | MAGNESIUM ION | 271 |
| Kmetal | POTASSIUM ION | 125 |
| PPK | (DIPHOSPHONO)AMINOPHOSPHONIC ACID | 117 |
| CL | CHLORIDE ION | 83 |
| POP | PYROPHOSPHATE 2- | 55 |
| ADN | ADENOSINE | 45 |
| 3PO | TRIPHOSPHATE | 34 |
| NAmetal | SODIUM ION | 26 |
| MET | METHIONINE | 25 |
| MPO | 3[N-MORPHOLINO]PROPANE SULFONIC ACID | 25 |
| ANP | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | 21 |
| MTA | 5'-DEOXY-5'-METHYLTHIOADENOSINE | 18 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 17 |
| 8AJ | 2-(7-chloro-5-phenyl[1,2,4]triazolo[4,3-a]quinolin-1-yl)-N,N-dimethylethan-1-amine | 12 |
| A1LVL | 7-chloranyl-5-(2-cyclopropylpyridin-3-yl)-1-methyl-imidazo[4,5-c]quinolin-4-one | 12 |
| APC | DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER | 12 |
| UM6 | 7-chloranyl-4-[(3R)-3-fluoranylpyrrolidin-1-yl]-1-phenyl-quinazolin-2-one | 12 |
| AMP | ADENOSINE MONOPHOSPHATE | 11 |
| EU9 | [(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[(3R)-3-azanyl-4-oxidanyl-4-oxidanylidene-butyl]-[(2-nitrophenyl)methyl]sulfanium | 10 |