ECOD
F-group (family)

328.6.1.1 EPSP_synthase

Open in classification tree →Pfam PF00275 →

Ligands and drugs

2,898
Member domains
505
with ligand contacts (≤ 4 Å)
17.4% of members
458
with DrugDomain annotations
15.8% of members
311
with a DrugBank compound
10.7% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 328.6.1.1 belongs to X-group 328 IF3-like, which binds 7.0 ligand superclasses per 20 proteins, narrower than 58% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB04328S3PShikimate-3-Phosphate66
DB03397UD1Uridine-Diphosphate-N-Acetylglucosamine60
DB04539GPJGlyphosate33
DB017330V5L-Phospholactate32
DB04174UDA3'-1-carboxy-1-phosphonooxy-ethoxy-uridine-diphosphate-N-acetylglucosamine32
DB01819PEPPhosphoenolpyruvate14
DB01861UPGUridine diphosphate glucose10
DB03435UDPUridine-5'-Diphosphate10
DB01879TAV(S)-2-{Methyl-[2-(Naphthalene-2-Sulfonylamino)-5-(Naphthalene-2-Sulfonyloxy)-Benzoyl]-Amino}-Succinicacid8
DB02995HAICyclohexylammonium Ion8
DB03345BMEMercaptoethanol7
DB03116SKP5-(1-Carboxy-1-Phosphonooxy-Ethoxyl)-Shikimate-3-Phosphate4
DB02196UD2Uridine-Diphosphate-N-Acetylgalactosamine2
DB04005UTPUridine 5'-triphosphate2
DB044742AN8-anilinonaphthalene-1-sulfonic acid1

Most frequently bound compounds

PDB ligandNameDomains in contact
S3PSHIKIMATE-3-PHOSPHATE85
EPUURIDINE-DIPHOSPHATE-2(N-ACETYLGLUCOSAMINYL) BUTYRIC ACID78
UD1URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE60
EPZ(2R)-2-{[(2R,3R,4R,5S,6R)-3-(acetylamino)-2-{[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl]oxy}propanoic acid58
GPJGLYPHOSATE55
CLCHLORIDE ION36
0V5(2R)-2-(phosphonooxy)propanoic acid32
UDA3'-1-CARBOXY-1-PHOSPHONOOXY-ETHOXY-URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE32
FFQ[(1R)-1-hydroxypropyl]phosphonic acid30
MGmetalMAGNESIUM ION28
PO3PHOSPHITE ION24
NAmetalSODIUM ION18
SKM(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID16
PEPPHOSPHOENOLPYRUVATE14
KmetalPOTASSIUM ION13
UDPURIDINE-5'-DIPHOSPHATE10
HAICYCLOHEXYLAMMONIUM ION9
UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE9
SPQ(3R,4S,5R)-5-{[(1R)-1-CARBOXY-2-FLUORO-1-(PHOSPHONOOXY)ETHYL]OXY}-4-HYDROXY-3-(PHOSPHONOOXY)CYCLOHEX-1-ENE-1-CARBOXYLIC ACID8
TAVN-METHYL-N-{2-[(2-NAPHTHYLSULFONYL)AMINO]-5-[(2-NAPHTHYLSULFONYL)OXY]BENZOYL}-L-ASPARTIC ACID8