F-group (family)
3379.1.1.1 PSII_Ycf12
Ligands and drugs
291
Member domains
284
with ligand contacts (≤ 4 Å)
97.6% of members
180
with DrugDomain annotations
61.9% of members
147
with a DrugBank compound
50.5% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 3379.1.1.1 belongs to X-group 3379 Photosystem II reaction center protein ycf12, which has 10 proteins with classified ligands. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB06755 | BCR | Beta carotene | 142 |
| DB02043 | LHG | 1,2-Dipalmitoyl-Phosphatidyl-Glycerole | 2 |
| DB02133 | CLA | Chlorophyll A | 2 |
| DB03193 | STE | Stearic acid | 1 |
| DB04450 | HTG | Heptyl 1-Thiohexopyranoside | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| CLA | CHLOROPHYLL A | 273 |
| BCR | BETA-CAROTENE | 271 |
| LMG | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | 250 |
| UNL | Unknown ligand | 17 |
| CAmetal | CALCIUM ION | 10 |
| DGA | DIACYL GLYCEROL | 9 |
| 8CT | (6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene | 8 |
| MGmetal | MAGNESIUM ION | 6 |
| STE | STEARIC ACID | 3 |
| WVN | 1,3,3-trimethyl-2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E)-3,7,12,16-tetramethyl-18-[(1R)-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene | 3 |
| HEM | PROTOPORPHYRIN IX CONTAINING FE | 1 |
| HTG | heptyl 1-thio-beta-D-glucopyranoside | 1 |
| LHG | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | 1 |
| PLM | PALMITIC ACID | 1 |