3382 Protein Wnt-8
Ligands and drugs
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
ClassyFire chemical superclasses of the ligands bound by this X-group's proteins, from DrugDomain annotations.
The raw number of superclasses rises with the number of proteins sampled; the per-20 value compares X-groups at equal depth.
| Superclass | Proteins | Expected | 0.25×observed / expected4× | Ratio | Significance |
|---|---|---|---|---|---|
| Lipids and lipid-like molecules | 5 | 0.6 | 9.11× | not tested | |
| Organic oxygen compounds | 1 | 1.0 | 1.02× | not tested | |
| Homogeneous non-metal compounds | 1 | 1.1 | 0.94× | not tested | |
| Homogeneous metal compounds | 1 | 2.4 | 0.41× | not tested |
Unit: a protein (UniProt accession) with a ligand-binding domain in this X-group, counted once per superclass. Expected counts use each superclass's frequency across all ligand-binding X-groups; significance is Fisher's exact test with Benjamini–Hochberg correction. Buffers and crystallization additives are excluded. ECOD v295.2; the method follows the ECOD 2027 update, whose published figures used a slightly different artifact filter.
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB04257 | PAM | Palmitoleic Acid | 8 |
| DB00141 | NAG | N-Acetylglucosamine | 3 |
| DB03690 | PCW | (Z,Z)-4-Hydroxy-N,N,N-Trimethyl-10-Oxo-7-[(1-Oxo-9-Octadecenyl)Oxy]-3,5,9-Trioxa-4-Phosphaheptacos-18-En-1-Aminium-4-Oxide | 1 |
| DB03796 | PLM | Palmitic Acid | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| PAM | PALMITOLEIC ACID | 8 |
| NAG | 2-acetamido-2-deoxy-beta-D-glucopyranose | 3 |
| POV | (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate | 3 |
| CL | CHLORIDE ION | 1 |
| DR9 | 1-CIS-9-OCTADECANOYL-2-CIS-9-HEXADECANOYL PHOSPHATIDYL GLYCEROL | 1 |
| NAmetal | SODIUM ION | 1 |
| PCW | 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE | 1 |
| PLM | PALMITIC ACID | 1 |
| ZNmetal | ZINC ION | 1 |