X-group (possible homology)

3470 Glycophorin-A transmembrane domain

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Ligands and drugs

605

Member domains

with ligand contacts (≤ 4 Å)

6.3% of members

with DrugDomain annotations

4.1% of members

with a DrugBank compound

2.3% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

ClassyFire chemical superclasses of the ligands bound by this X-group's proteins, from DrugDomain annotations.

Proteins with classified ligands

Superclasses bound (of 23)

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Superclasses per 20 proteins

fewer than 20 proteins: too few to compare at equal depth

The raw number of superclasses rises with the number of proteins sampled; the per-20 value compares X-groups at equal depth.

Superclass	Proteins	Expected	0.25×observed / expected4×	Ratio	Significance
Lipids and lipid-like molecules	2	0.2		9.11×	not tested
Homogeneous metal compounds	1	1.0		1.03×	not tested

enriched (q < 0.05)depleted (q < 0.05)not significantnot tested (expected < 5)

Unit: a protein (UniProt accession) with a ligand-binding domain in this X-group, counted once per superclass. Expected counts use each superclass's frequency across all ligand-binding X-groups; significance is Fisher's exact test with Benjamini–Hochberg correction. Buffers and crystallization additives are excluded. ECOD v295.2; the method follows the ECOD 2027 update, whose published figures used a slightly different artifact filter.

DrugBank compounds

DrugBank	PDB ligand	Name	Domains
DB04540	CLR	Cholesterol	14

Most frequently bound compounds

PDB ligand	Name	Domains in contact
CLR	CHOLESTEROL	24
OLB	(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate	7
OLC	(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate	7
CAmetal	CALCIUM ION	3
Kmetal	POTASSIUM ION	3