ECOD
F-group (family)

3493.1.1.1 PsbX

Open in classification tree →Pfam PF06596 →

Ligands and drugs

366
Member domains
319
with ligand contacts (≤ 4 Å)
87.2% of members
234
with DrugDomain annotations
63.9% of members
234
with a DrugBank compound
63.9% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 3493.1.1.1 belongs to X-group 3493 Photosystem II PsbX protein, which has 16 proteins with classified ligands. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB02133CLAChlorophyll A226
DB06755BCRBeta carotene191
DB03193STEStearic acid49
DB15914RRXCryptoxanthin33
DB02043LHG1,2-Dipalmitoyl-Phosphatidyl-Glycerole10
DB04450HTGHeptyl 1-Thiohexopyranoside7
DB03426DGDDigalactosyl Diacyl Glycerol (Dgdg)2

Most frequently bound compounds

PDB ligandNameDomains in contact
CLACHLOROPHYLL A312
BCRBETA-CAROTENE235
SQD1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL210
PL92,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE152
UNLUnknown ligand108
RRX(3R)-beta,beta-caroten-3-ol56
STESTEARIC ACID52
LMG1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE44
LHG1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE14
DGADIACYL GLYCEROL12
8CT(6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene7
LFAEICOSANE7
CL7CHLOROPHYLL D6
PLMPALMITIC ACID4
3PH1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE2
HTGheptyl 1-thio-beta-D-glucopyranoside2
LNLALPHA-LINOLENIC ACID2
P6GHEXAETHYLENE GLYCOL2
VTQRRR-ALPHA-TOCOPHERYLQUINONE2
WVN1,3,3-trimethyl-2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E)-3,7,12,16-tetramethyl-18-[(1R)-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene2