X-group (possible homology)

3532 RNA-binding domain of telomerase

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Ligands and drugs

Member domains

with ligand contacts (≤ 4 Å)

11.2% of members

with DrugDomain annotations

11.2% of members

with a DrugBank compound

5.6% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

ClassyFire chemical superclasses of the ligands bound by this X-group's proteins, from DrugDomain annotations.

Proteins with classified ligands

Superclasses bound (of 23)

—

Superclasses per 20 proteins

fewer than 20 proteins: too few to compare at equal depth

The raw number of superclasses rises with the number of proteins sampled; the per-20 value compares X-groups at equal depth.

Superclass	Proteins	Expected	Ratio	Significance
Organoheterocyclic compounds	1	0.5	2.20×	not tested
Homogeneous non-metal compounds	1	0.6	1.57×	not tested
Nucleosides, nucleotides, and analogues	1	0.8	1.22×	not tested
Homogeneous metal compounds	1	1.5	0.69×	not tested

enriched (q < 0.05)depleted (q < 0.05)not significantnot tested (expected < 5)

Unit: a protein (UniProt accession) with a ligand-binding domain in this X-group, counted once per superclass. Expected counts use each superclass's frequency across all ligand-binding X-groups; significance is Fisher's exact test with Benjamini–Hochberg correction. Buffers and crystallization additives are excluded. ECOD v295.2; the method follows the ECOD 2027 update, whose published figures used a slightly different artifact filter.

DrugBank compounds

DrugBank	PDB ligand	Name	Domains
DB00495	—	Zidovudine	1
DB02181	DGT	2'-Deoxyguanosine-5'-Triphosphate	1
DB03532	G2P	Phosphomethylphosphonic acid guanylate ester	1

Most frequently bound compounds

PDB ligand	Name	Domains in contact
A1ACD	1-{2-deoxy-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]-beta-D-threo-pentofuranosyl}-5-methylpyrimidine-2,4(1H,3H)-dione	1
BR	BROMIDE ION	1
HUV	methyl 1-{2-deoxy-5-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-alpha-D-erythro-pentofuranosyl}-1H-indole-5-carboxylate	1
Kmetal	POTASSIUM ION	1
NAmetal	SODIUM ION	1
ZNmetal	ZINC ION	1