F-group (family)
385.1.1.5 PDGF
Ligands and drugs
252
Member domains
60
with ligand contacts (≤ 4 Å)
23.8% of members
53
with DrugDomain annotations
21.0% of members
52
with a DrugBank compound
20.6% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 385.1.1.5 belongs to X-group 385 Cystine-knot cytokines, which binds 6.7 ligand superclasses per 20 proteins, narrower than 65% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00141 | NAG | N-Acetylglucosamine | 10 |
| DB02676 | B3P | 2-[3-(2-Hydroxy-1,1-Dihydroxymethyl-Ethylamino)-Propylamino]-2-Hydroxymethyl-Propane-1,3-Diol | 2 |
| DB01017 | — | Minocycline | 1 |
| DB01120 | — | Gliclazide | 1 |
| DB01136 | — | — | 1 |
| DB03088 | — | Pidolic acid | 1 |
| DB05294 | — | Vandetanib | 1 |
| DB05434 | — | — | 1 |
| DB05932 | — | — | 1 |
| DB05969 | — | SNS-032 | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| TFA | trifluoroacetic acid | 10 |
| NAG | 2-acetamido-2-deoxy-beta-D-glucopyranose | 5 |
| BEN | BENZAMIDINE | 4 |
| CSmetal | CESIUM ION | 3 |
| CL | CHLORIDE ION | 2 |
| B3P | 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | 1 |
| MAN | alpha-D-mannopyranose | 1 |
| NH2 | AMINO GROUP | 1 |