T-group (topology)
3949.1.1 tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain
Ligands and drugs
1,413
Member domains
15
with ligand contacts (≤ 4 Å)
1.1% of members
15
with DrugDomain annotations
1.1% of members
10
with a DrugBank compound
0.7% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 3949.1.1 belongs to X-group 3949 tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain, which has 3 proteins with classified ligands. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB02270 | DST | Dimethylallyl S-Thiolodiphosphate | 3 |
| DB04160 | PPV | Pyrophosphoric acid | 3 |
| DB01785 | DMA | Dimethylallyl Diphosphate | 2 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MGmetal | MAGNESIUM ION | 12 |
| ZNmetal | ZINC ION | 8 |
| DST | DIMETHYLALLYL S-THIOLODIPHOSPHATE | 3 |
| PPV | PYROPHOSPHATE | 3 |
| DMA | DIMETHYLALLYL DIPHOSPHATE | 2 |
| DPO | DIPHOSPHATE | 2 |
| CAmetal | CALCIUM ION | 1 |
| CL | CHLORIDE ION | 1 |