ECOD
T-group (topology)

4020.1.1 a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes

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Ligands and drugs

715
Member domains
405
with ligand contacts (≤ 4 Å)
56.6% of members
369
with DrugDomain annotations
51.6% of members
323
with a DrugBank compound
45.2% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 4020.1.1 belongs to X-group 4020 a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes, which binds 7.0 ligand superclasses per 20 proteins, narrower than 58% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB00114PLPPyridoxal phosphate245
DB02142PMPPyridoxamine-5'-Phosphate22
DB00996GBNGabapentin9
DB039934MVIsocaproic acid8
DB00160ALAAlanine6
DB01813PPEPyridoxyl-Glutamic Acid-5'-Monophosphate6
DB03229COIalpha-Ketoisocaproic acid6
DB08845AKGOxogluric acid6
DB00142GLUGlutamic acid4
DB07544CBCN'-(5-CHLOROBENZOFURAN-2-CARBONYL)-2-(TRIFLUOROMETHYL)BENZENESULFONOHYDRAZIDE4
DB02038DCSD-[3-hydroxy-2-methyl-5-phosphonooxymethyl-pyridin-4-ylmethyl]-N,O-cycloserylamide3
DB03553GUAGlutaric Acid3
DB03662PY5Vitamin B6 Complexed with 2-Amino-Pentanoic Acid3
DB040632MLalpha-Methylleucine3
DB00149—Leucine2
DB00167—Isoleucine2
DB01993PDDN-(5'-Phosphopyridoxyl)-D-Alanine2
DB02024HCI3-phenylpropionic acid2
DB02635ILPN-[O-Phosphono-Pyridoxyl]-Isoleucine2
DB02824PLGN-Pyridoxyl-Glycine-5-Monophosphate2

Most frequently bound compounds

PDB ligandNameDomains in contact
PLPPYRIDOXAL-5'-PHOSPHATE260
CLCHLORIDE ION50
PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE25
MGmetalMAGNESIUM ION15
9HC[4-[3-(4-bromophenyl)-3-oxidanylidene-propyl]-6-methyl-5-oxidanyl-pyridin-3-yl]methyl phosphate12
ALAALANINE12
GBN[1-(AMINOMETHYL)CYCLOHEXYL]ACETIC ACID9
PXG3-[O-PHOSPHONOPYRIDOXYL]--AMINO-BENZOIC ACID9
4MV4-METHYL VALERIC ACID8
FUDD-fructose8
IODIODIDE ION8
OCF3-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]oxypropanoic acid7
AKG2-OXOGLUTARIC ACID6
COI2-OXO-4-METHYLPENTANOIC ACID6
NAmetalSODIUM ION6
PPE4-[(1,3-DICARBOXY-PROPYLAMINO)-METHYL]-3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDINIUM6
CBCN'-(5-CHLOROBENZOFURAN-2-CARBONYL)-2-(TRIFLUOROMETHYL)BENZENESULFONOHYDRAZIDE4
PW0(~{Z})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]pent-2-enedioic acid4
UNLUnknown ligand4
UTK4-[2,4-bis(oxidanylidene)-6-(trifluoromethyl)-1H-pyrimidin-3-yl]-5-fluoranyl-2-(2-methylphenoxy)benzenecarbonitrile4