F-group (family)
4042.1.1.3 RNA_pol_Rpb2_5
Ligands and drugs
245
Member domains
33
with ligand contacts (≤ 4 Å)
13.5% of members
35
with DrugDomain annotations
14.3% of members
29
with a DrugBank compound
11.8% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 4042.1.1.3 belongs to X-group 4042 barrel domain in beta subunit of DNA dependent RNA-polymerase, which has 16 proteins with classified ligands. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB02596 | APC | alpha,beta-Methyleneadenosine 5'-triphosphate | 8 |
| DB03532 | G2P | Phosphomethylphosphonic acid guanylate ester | 5 |
| DB00171 | ATP | ATP | 4 |
| DB04005 | UTP | Uridine 5'-triphosphate | 4 |
| DB04137 | GTP | Guanosine-5'-Triphosphate | 3 |
| DB02333 | DUT | Deoxyuridine-5'-Triphosphate | 2 |
| DB02181 | DGT | 2'-Deoxyguanosine-5'-Triphosphate | 1 |
| DB02431 | CTP | Cytidine-5'-Triphosphate | 1 |
| DB04160 | PPV | Pyrophosphoric acid | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| APC | DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER | 6 |
| G2P | PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER | 5 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 4 |
| UTP | URIDINE 5'-TRIPHOSPHATE | 4 |
| ZNmetal | ZINC ION | 4 |
| GTP | GUANOSINE-5'-TRIPHOSPHATE | 3 |
| 2KH | 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine | 2 |
| DUT | DEOXYURIDINE-5'-TRIPHOSPHATE | 2 |
| CTP | CYTIDINE-5'-TRIPHOSPHATE | 1 |
| DGT | 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE | 1 |
| MGmetal | MAGNESIUM ION | 1 |