X-group (possible homology)

4184 MFPT repeat

Ligands and drugs

251
Member domains
64
with ligand contacts (≤ 4 Å)
25.5% of members
63
with DrugDomain annotations
25.1% of members
44
with a DrugBank compound
17.5% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

ClassyFire chemical superclasses of the ligands bound by this X-group's proteins, from DrugDomain annotations.

2
Proteins with classified ligands
4
Superclasses bound (of 23)
—
Superclasses per 20 proteins
fewer than 20 proteins: too few to compare at equal depth

The raw number of superclasses rises with the number of proteins sampled; the per-20 value compares X-groups at equal depth.

SuperclassProteinsExpected
0.25×observed / expected4×
RatioSignificance
Organic nitrogen compounds10.116×not tested
Organic oxygen compounds10.42.55×not tested
Homogeneous non-metal compounds10.42.36×not tested
Homogeneous metal compounds21.02.07×not tested
enriched (q < 0.05)depleted (q < 0.05)not significantnot tested (expected < 5)

Unit: a protein (UniProt accession) with a ligand-binding domain in this X-group, counted once per superclass. Expected counts use each superclass's frequency across all ligand-binding X-groups; significance is Fisher's exact test with Benjamini–Hochberg correction. Buffers and crystallization additives are excluded. ECOD v295.2; the method follows the ECOD 2027 update, whose published figures used a slightly different artifact filter.

DrugBank compounds

DrugBankPDB ligandNameDomains
DB03309NHEN-cyclohexyltaurine2

Most frequently bound compounds

PDB ligandNameDomains in contact
BMAbeta-D-mannopyranose12
MANalpha-D-mannopyranose8
MGmetalMAGNESIUM ION6
CLCHLORIDE ION2
NHE2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID2
ZNmetalZINC ION2