X-group (possible homology)

4300 Viral glycoprotein ectodomain-like

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Ligands and drugs

190

Member domains

with ligand contacts (≤ 4 Å)

39.5% of members

with DrugDomain annotations

24.7% of members

with a DrugBank compound

19.5% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

ClassyFire chemical superclasses of the ligands bound by this X-group's proteins, from DrugDomain annotations.

Proteins with classified ligands

Superclasses bound (of 23)

—

Superclasses per 20 proteins

fewer than 20 proteins: too few to compare at equal depth

The raw number of superclasses rises with the number of proteins sampled; the per-20 value compares X-groups at equal depth.

Superclass	Proteins	Expected	Ratio	Significance
Homogeneous metal compounds	4	6.3	0.64×	q = 0.34
Organic oxygen compounds	12	2.6	4.70×	not tested
Homogeneous non-metal compounds	1	2.8	0.36×	not tested

enriched (q < 0.05)depleted (q < 0.05)not significantnot tested (expected < 5)

Unit: a protein (UniProt accession) with a ligand-binding domain in this X-group, counted once per superclass. Expected counts use each superclass's frequency across all ligand-binding X-groups; significance is Fisher's exact test with Benjamini–Hochberg correction. Buffers and crystallization additives are excluded. ECOD v295.2; the method follows the ECOD 2027 update, whose published figures used a slightly different artifact filter.

DrugBank compounds

DrugBank	PDB ligand	Name	Domains
DB00141	NAG	N-Acetylglucosamine	37
DB04481	MRY	Erythritol	1

Most frequently bound compounds

PDB ligand	Name	Domains in contact
NAG	2-acetamido-2-deoxy-beta-D-glucopyranose	65
CAmetal	CALCIUM ION	8
CL	CHLORIDE ION	6
NAmetal	SODIUM ION	3
MRY	MESO-ERYTHRITOL	2
HGmetal	MERCURY (II) ION	1
MGmetal	MAGNESIUM ION	1
TBmetal	TERBIUM(III) ION	1
YBmetal	YTTERBIUM (III) ION	1