F-group (family)
4959.1.1.1 RNA_pol_Rpb1_3
Ligands and drugs
2,144
Member domains
87
with ligand contacts (≤ 4 Å)
4.1% of members
84
with DrugDomain annotations
3.9% of members
31
with a DrugBank compound
1.4% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 4959.1.1.1 belongs to X-group 4959 first helical domain in RNA-polymerase beta-prime subunit, which has 8 proteins with classified ligands. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB04022 | G4P | Guanosine tetraphosphate | 10 |
| DB02431 | CTP | Cytidine-5'-Triphosphate | 4 |
| DB02596 | APC | alpha,beta-Methyleneadenosine 5'-triphosphate | 4 |
| DB00156 | THR | Threonine | 2 |
| DB00171 | ATP | ATP | 2 |
| DB04005 | UTP | Uridine 5'-triphosphate | 2 |
| DB04137 | GTP | Guanosine-5'-Triphosphate | 2 |
| DB04788 | TGT | Tagetitoxin | 2 |
| DB03258 | DCP | 2'-Deoxycytidine 5'-triphosphate | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MGmetal | MAGNESIUM ION | 61 |
| G4P | GUANOSINE-5',3'-TETRAPHOSPHATE | 12 |
| APC | DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER | 5 |
| ZNmetal | ZINC ION | 3 |
| 2TM | 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine | 2 |
| TGT | TAGETITOXIN | 2 |
| 0O2 | guanosine 5'-(tetrahydrogen triphosphate) 3'-(trihydrogen diphosphate) | 1 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 1 |
| POP | PYROPHOSPHATE 2- | 1 |