T-group (topology)
4964.1.1 helical bundle in Bacillus stearothermophilus-like DNA polymerase I
Ligands and drugs
670
Member domains
367
with ligand contacts (≤ 4 Å)
54.8% of members
292
with DrugDomain annotations
43.6% of members
187
with a DrugBank compound
27.9% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 4964.1.1 belongs to X-group 4964 helical bundle in Bacillus stearothermophilus-like DNA polymerase I, which has 16 proteins with classified ligands. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB02181 | DGT | 2'-Deoxyguanosine-5'-Triphosphate | 33 |
| DB03258 | DCP | 2'-Deoxycytidine 5'-triphosphate | 21 |
| DB02452 | TTP | Thymidine 5'-triphosphate | 14 |
| DB02189 | DDS | 2',3'-Dideoxyadenosine triphosphate | 12 |
| DB02431 | CTP | Cytidine-5'-Triphosphate | 12 |
| DB00171 | ATP | ATP | 6 |
| DB02596 | APC | alpha,beta-Methyleneadenosine 5'-triphosphate | 5 |
| DB03222 | DTP | dATP | 4 |
| DB03896 | 3PO | Triphosphoric acid | 4 |
| DB04137 | GTP | Guanosine-5'-Triphosphate | 4 |
| DB03152 | BGL | B-2-Octylglucoside | 2 |
| DB00131 | AMP | Adenosine phosphate | 1 |
| DB01972 | 5GP | Guanosine-5'-Monophosphate | 1 |
| DB03532 | G2P | Phosphomethylphosphonic acid guanylate ester | 1 |
| DB07435 | BAP | 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| DGT | 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE | 40 |
| MGmetal | MAGNESIUM ION | 37 |
| DG3 | 2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE | 31 |
| DCP | 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE | 29 |
| DPO | DIPHOSPHATE | 24 |
| DCT | 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE | 23 |
| TTP | THYMIDINE-5'-TRIPHOSPHATE | 15 |
| CTP | CYTIDINE-5'-TRIPHOSPHATE | 12 |
| DDS | 2',3'-dideoxyadenosine triphosphate | 12 |
| DTP | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE | 12 |
| D3T | 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE | 11 |
| XG4 | 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine | 9 |
| CL | CHLORIDE ION | 7 |
| DAD | 2',3'-DIDEOXYADENOSINE-5'-TRIPHOSPHATE | 7 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 6 |
| APC | DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER | 5 |
| 3PO | TRIPHOSPHATE | 4 |
| GTP | GUANOSINE-5'-TRIPHOSPHATE | 4 |
| K8I | (2~{S},3~{R})-1-[3-cyano-6-methyl-4-(trifluoromethyl)pyridin-2-yl]-~{N}-methyl-~{N}-(3-methylphenyl)-3-oxidanyl-pyrrolidine-2-carboxamide | 4 |
| POP | PYROPHOSPHATE 2- | 4 |