F-group (family)
4967.1.1.2 RdRP_1
Ligands and drugs
154
Member domains
112
with ligand contacts (≤ 4 Å)
72.7% of members
104
with DrugDomain annotations
67.5% of members
40
with a DrugBank compound
26.0% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 4967.1.1.2 belongs to X-group 4967 helical bundle domain in reverse transcriptase-like polymerases, which binds 8.6 ligand superclasses per 20 proteins, broader than 70% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB04137 | GTP | Guanosine-5'-Triphosphate | 11 |
| DB00171 | ATP | ATP | 5 |
| DB01972 | G | Guanosine-5'-Monophosphate | 3 |
| DB00544 | URF | Fluorouracil | 2 |
| DB00811 | RBV | Ribavirin | 2 |
| DB04786 | SVR | Suramin | 2 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MNmetal | MANGANESE (II) ION | 37 |
| MGmetal | MAGNESIUM ION | 36 |
| GTP | GUANOSINE-5'-TRIPHOSPHATE | 15 |
| 2NG | 4-({4-methyl-3-[(3-nitrobenzoyl)amino]benzoyl}amino)naphthalene-1,5-disulfonic acid | 7 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 6 |
| 20V | 3-[(E)-{4-formyl-5-hydroxy-6-methyl-3-[(phosphonooxy)methyl]pyridin-2-yl}diazenyl]-7-nitronaphthalene-1,5-disulfonicacid | 4 |
| 0BU | 8-({3-[({3-[(4,6,8-trisulfonaphthalen-1-yl)carbamoyl]phenyl}carbamoyl)amino]benzoyl}amino)naphthalene-1,3,5-trisulfonicacid | 3 |
| CAmetal | CALCIUM ION | 3 |
| CL | CHLORIDE ION | 2 |
| SVR | 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-NAPHTHALENETRISULFONIC ACID | 2 |
| URF | 5-FLUOROURACIL | 2 |
| 21D | naphthalene-1,5-disulfonic acid | 1 |
| 2TU | 1-(beta-D-ribofuranosyl)-2-thioxo-2,3-dihydropyrimidin-4(1H)-one | 1 |
| LUmetal | LUTETIUM (III) ION | 1 |
| MN3metal | MANGANESE (III) ION | 1 |
| RBV | 1-(beta-D-ribofuranosyl)-1H-1,2,4-triazole-3-carboxamide | 1 |