H-group (homology)
4970.1 "fingers" domain in bacteriophage RB69-like DNA polymerase I
Ligands and drugs
1,144
Member domains
479
with ligand contacts (≤ 4 Å)
41.9% of members
443
with DrugDomain annotations
38.7% of members
333
with a DrugBank compound
29.1% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 4970.1 belongs to X-group 4970 "fingers" domain in bacteriophage RB69-like DNA polymerase I, which binds 8.3 ligand superclasses per 20 proteins, broader than 64% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB02181 | DGT | 2'-Deoxyguanosine-5'-Triphosphate | 53 |
| DB02452 | TTP | Thymidine 5'-triphosphate | 48 |
| DB03258 | DCP | 2'-Deoxycytidine 5'-triphosphate | 43 |
| DB03222 | DTP | dATP | 40 |
| DB00171 | ATP | ATP | 16 |
| DB02431 | CTP | Cytidine-5'-Triphosphate | 15 |
| DB02189 | DDS | 2',3'-Dideoxyadenosine triphosphate | 12 |
| DB01965 | DUP | 2'-Deoxyuridine 5'-alpha,beta-imido-triphosphate | 9 |
| DB04137 | GTP | Guanosine-5'-Triphosphate | 6 |
| DB01972 | 5GP | Guanosine-5'-Monophosphate | 4 |
| DB04005 | UTP | Uridine 5'-triphosphate | 4 |
| DB04160 | PPV | Pyrophosphoric acid | 3 |
| DB04447 | DTT | 1,4-Dithiothreitol | 3 |
| DB04457 | DGP | 2'-Deoxyguanosine-5'-Monophosphate | 3 |
| DB03532 | G2P | Phosphomethylphosphonic acid guanylate ester | 2 |
| DB17742 | 2ZE | Aphidicolin | 2 |
| DB00131 | AMP | Adenosine phosphate | 1 |
| DB00529 | PPF | Foscarnet | 1 |
| DB02596 | APC | alpha,beta-Methyleneadenosine 5'-triphosphate | 1 |
| DB02883 | DOC | 2',3'-Dideoxycytidine-5'-Monophosphate | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| CAmetal | CALCIUM ION | 86 |
| DGT | 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE | 60 |
| TTP | THYMIDINE-5'-TRIPHOSPHATE | 48 |
| DCP | 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE | 44 |
| DTP | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE | 44 |
| DG3 | 2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE | 28 |
| DCT | 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE | 20 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 16 |
| MGmetal | MAGNESIUM ION | 16 |
| CTP | CYTIDINE-5'-TRIPHOSPHATE | 15 |
| D3T | 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE | 14 |
| XG4 | 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine | 13 |
| CL | CHLORIDE ION | 9 |
| DUP | 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE | 9 |
| DDS | 2',3'-dideoxyadenosine triphosphate | 8 |
| NAmetal | SODIUM ION | 7 |
| ZNmetal | ZINC ION | 6 |
| DAD | 2',3'-DIDEOXYADENOSINE-5'-TRIPHOSPHATE | 5 |
| GTP | GUANOSINE-5'-TRIPHOSPHATE | 5 |
| UTP | URIDINE 5'-TRIPHOSPHATE | 4 |