X-group (possible homology)

4971 second a+b domain in acetyl-CoA synthase

Ligands and drugs

109
Member domains
62
with ligand contacts (≤ 4 Å)
56.9% of members
47
with DrugDomain annotations
43.1% of members
27
with a DrugBank compound
24.8% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

ClassyFire chemical superclasses of the ligands bound by this X-group's proteins, from DrugDomain annotations.

4
Proteins with classified ligands
3
Superclasses bound (of 23)
—
Superclasses per 20 proteins
fewer than 20 proteins: too few to compare at equal depth

The raw number of superclasses rises with the number of proteins sampled; the per-20 value compares X-groups at equal depth.

SuperclassProteinsExpected
0.25×observed / expected4×
RatioSignificance
Organosulfur compounds10.112×not tested
Homogeneous non-metal compounds20.92.36×not tested
Homogeneous metal compounds41.92.07×not tested
enriched (q < 0.05)depleted (q < 0.05)not significantnot tested (expected < 5)

Unit: a protein (UniProt accession) with a ligand-binding domain in this X-group, counted once per superclass. Expected counts use each superclass's frequency across all ligand-binding X-groups; significance is Fisher's exact test with Benjamini–Hochberg correction. Buffers and crystallization additives are excluded. ECOD v295.2; the method follows the ECOD 2027 update, whose published figures used a slightly different artifact filter.

DrugBank compounds

DrugBankPDB ligandNameDomains
DB11588CMOCarbon monoxide3

Most frequently bound compounds

PDB ligandNameDomains in contact
NImetalNICKEL (II) ION55
SF4IRON/SULFUR CLUSTER55
CU1metalCOPPER (I) ION16
ZNmetalZINC ION9
H2SHYDROSULFURIC ACID6
CMOCARBON MONOXIDE5
UWE$l^{3}-oxidanylidynemethylnickel2
74Cmethyl radical1
ACEACETYL GROUP1
ACOACETYL COENZYME *A1
B12COBALAMIN1
CAmetalCALCIUM ION1
MEEMETHANETHIOL1
PG61-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE1
SXSULFUR OXIDE1
XEXENON1