F-group (family)
5.1.4.15 RPE65
Ligands and drugs
309
Member domains
191
with ligand contacts (≤ 4 Å)
61.8% of members
166
with DrugDomain annotations
53.7% of members
62
with a DrugBank compound
20.1% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 5.1.4.15 belongs to X-group 5 beta-propeller-like, which binds 7.8 ligand superclasses per 20 proteins, broader than 52% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB03796 | PLM | Palmitic Acid | 20 |
| DB03793 | BEZ | Benzoic acid | 7 |
| DB09140 | OXY | Oxygen | 7 |
| DB02709 | STL | Resveratrol | 5 |
| DB12608 | A3V | Emixustat | 5 |
| DB02253 | 3ON | (1r)-4-[(1e,3e,5e,7z,9e,11z,13e,15e)-17-Hydroxy-3,7,12,16-Tetramethylheptadeca-1,3,5,7,9,11,13,15-Octaen-1-Yl]-3,5,5-Trimethylcyclohex-3-En-1-Ol | 4 |
| DB08399 | PIT | Piceatannol | 4 |
| DB02249 | ETX | 2-Ethoxyethanol | 2 |
| DB02580 | PG6 | Pentaglyme | 2 |
| DB03902 | OXD | Oxalic Acid | 2 |
| DB02219 | CXS | 3-(cyclohexylamino)propanesulfonic acid | 1 |
| DB14522 | OH | Hydroxide ion | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| FE2metal | FE (II) ION | 127 |
| CL | CHLORIDE ION | 60 |
| COmetal | COBALT (II) ION | 36 |
| FEmetal | FE (III) ION | 23 |
| NAmetal | SODIUM ION | 22 |
| PLM | PALMITIC ACID | 22 |
| PIT | PICEATANNOL | 16 |
| BEZ | BENZOIC ACID | 12 |
| OXY | OXYGEN MOLECULE | 7 |
| MGmetal | MAGNESIUM ION | 6 |
| A3V | (1R)-3-amino-1-[3-(cyclohexylmethoxy)phenyl]propan-1-ol | 5 |
| STL | RESVERATROL | 5 |
| 3ON | (3R)-3-HYDROXY-8'-APOCAROTENOL | 4 |
| 83D | 5-[(Z)-2-fluoro-2-(4-hydroxyphenyl)ethenyl]benzene-1,3-diol | 4 |
| QVM | (2E,4E,6E,8E,10E)-11-[(4R)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-5,9-dimethylundeca-2,4,6,8,10-pentaenal | 4 |
| 32M | 3,6,9,12,15,18-hexaoxahexacosan-1-ol | 2 |
| 8D7 | (1R)-3-amino-1-{3-[(2-propylpentyl)oxy]phenyl}propan-1-ol | 2 |
| 8E4 | (3S)-3-({3-[(1R)-3-amino-1-hydroxypropyl]phenoxy}methyl)hexan-1-ol | 2 |
| A1BEO | 3-[(1R)-3-amino-1-hydroxypropyl]phenyl 2-ethylbutanoate | 2 |
| A5V | (1S)-3-amino-1-[3-(cyclohexylmethoxy)phenyl]propan-1-ol | 2 |